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Glycoproteomics
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …
proteins and is a crucial protein modification in health and disease. The aim of …
Recent advances in computational algorithms and software for large-scale glycoproteomics
Glycoproteomics, or characterizing glycosylation events at a proteome scale, has seen rapid
advances in methods for analyzing glycopeptides by tandem mass spectrometry in recent …
advances in methods for analyzing glycopeptides by tandem mass spectrometry in recent …
MSBooster: improving peptide identification rates using deep learning-based features
Peptide identification in liquid chromatography-tandem mass spectrometry (LC-MS/MS)
experiments relies on computational algorithms for matching acquired MS/MS spectra …
experiments relies on computational algorithms for matching acquired MS/MS spectra …
Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides
Post-translational modifications are an area of great interest in mass spectrometry-based
proteomics, with a surge in methods to detect them in recent years. However, post …
proteomics, with a surge in methods to detect them in recent years. However, post …
Glycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics
Here we present GlycanFinder, a database search and de novo sequencing tool for the
analysis of intact glycopeptides from mass spectrometry data. GlycanFinder integrates …
analysis of intact glycopeptides from mass spectrometry data. GlycanFinder integrates …
Expanding N-glycopeptide identifications by modeling fragmentation, elution, and glycome connectivity
Accurate glycopeptide identification in mass spectrometry-based glycoproteomics is a
challenging problem at scale. Recent innovation has been made in increasing the scope …
challenging problem at scale. Recent innovation has been made in increasing the scope …
[HTML][HTML] N-glycoproteomics of brain synapses and synaptic vesicles
At mammalian neuronal synapses, synaptic vesicle (SV) glycoproteins are essential for
robust neurotransmission. Asparagine (N)-linked glycosylation is required for delivery of the …
robust neurotransmission. Asparagine (N)-linked glycosylation is required for delivery of the …
Uncovering missing glycans and unexpected fragments with pGlycoNovo for site-specific glycosylation analysis across species
WF Zeng, G Yan, H Zhao, C Liu, W Cao - Nature Communications, 2024 - nature.com
Precision map** of site-specific glycans using mass spectrometry is vital in
glycoproteomics. However, the diversity of glycan compositions across species often …
glycoproteomics. However, the diversity of glycan compositions across species often …
Unraveling the glycosylated immunopeptidome with HLA-Glyco
Recent interest in targeted therapies has been sparked by the study of MHC-associated
peptides (MAPs) that undergo post-translational modifications (PTMs), particularly …
peptides (MAPs) that undergo post-translational modifications (PTMs), particularly …
Deep learning prediction of glycopeptide tandem mass spectra powers glycoproteomics
Protein glycosylation, a post-translational modification of proteins by glycans, plays an
important role in numerous physiological and pathological cellular functions …
important role in numerous physiological and pathological cellular functions …