Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …

Deep learning in drug discovery: an integrative review and future challenges

H Askr, E Elgeldawi, H Aboul Ella… - Artificial Intelligence …, 2023 - Springer
Recently, using artificial intelligence (AI) in drug discovery has received much attention
since it significantly shortens the time and cost of develo** new drugs. Deep learning (DL) …

[HTML][HTML] Integration strategies of multi-omics data for machine learning analysis

M Picard, MP Scott-Boyer, A Bodein, O Périn… - Computational and …, 2021 - Elsevier
Increased availability of high-throughput technologies has generated an ever-growing
number of omics data that seek to portray many different but complementary biological …

[PDF][PDF] KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction.

X Lin, Z Quan, ZJ Wang, T Ma, X Zeng - IJCAI, 2020 - xuanlin1991.github.io
Drug-drug interaction (DDI) prediction is a challenging problem in pharmacology and
clinical application, and effectively identifying potential D-DIs during clinical trials is critical …

Graph representation learning in bioinformatics: trends, methods and applications

HC Yi, ZH You, DS Huang… - Briefings in …, 2022 - academic.oup.com
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …

Gnnguard: Defending graph neural networks against adversarial attacks

X Zhang, M Zitnik - Advances in neural information …, 2020 - proceedings.neurips.cc
Deep learning methods for graphs achieve remarkable performance on many tasks.
However, despite the proliferation of such methods and their success, recent findings …

Polymer informatics: Current status and critical next steps

L Chen, G Pilania, R Batra, TD Huan, C Kim… - Materials Science and …, 2021 - Elsevier
Artificial intelligence (AI) based approaches are beginning to impact several domains of
human life, science and technology. Polymer informatics is one such domain where AI and …

Hi-GCN: A hierarchical graph convolution network for graph embedding learning of brain network and brain disorders prediction

H Jiang, P Cao, MY Xu, J Yang, O Zaiane - Computers in Biology and …, 2020 - Elsevier
Purpose Recently, brain connectivity networks have been used for the classification of
neurological disorder, such as Autism Spectrum Disorders (ASD) or Alzheimer's disease …

Biological network analysis with deep learning

G Muzio, L O'Bray, K Borgwardt - Briefings in bioinformatics, 2021 - academic.oup.com
Recent advancements in experimental high-throughput technologies have expanded the
availability and quantity of molecular data in biology. Given the importance of interactions in …

Heterogeneous network representation learning: A unified framework with survey and benchmark

C Yang, Y **ao, Y Zhang, Y Sun… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
Since real-world objects and their interactions are often multi-modal and multi-typed,
heterogeneous networks have been widely used as a more powerful, realistic, and generic …