Cell Painting: a decade of discovery and innovation in cellular imaging

S Seal, MA Trapotsi, O Spjuth, S Singh… - Nature …, 2024 - nature.com
Modern quantitative image analysis techniques have enabled high-throughput, high-content
imaging experiments. Image-based profiling leverages the rich information in images to …

Evaluating batch correction methods for image-based cell profiling

J Arevalo, E Su, JD Ewald, R van Dijk… - Nature …, 2024 - nature.com
High-throughput image-based profiling platforms are powerful technologies capable of
collecting data from billions of cells exposed to thousands of perturbations in a time-and cost …

Morphological profiling for drug discovery in the era of deep learning

Q Tang, R Ratnayake, G Seabra, Z Jiang… - Briefings in …, 2024 - academic.oup.com
Morphological profiling is a valuable tool in phenotypic drug discovery. The advent of high-
throughput automated imaging has enabled the capturing of a wide range of morphological …

Cell Painting and Chemical Structure Read-Across Can Complement Each Other for Rat Acute Oral Toxicity Prediction in Chemical Early Derisking

F Camilleri, JM Wenda… - Chemical Research …, 2024 - ACS Publications
Early derisking decisions in the development of new chemical compounds enable the
identification of novel chemical candidates with improved safety profiles. In vivo studies are …

A genome-wide atlas of human cell morphology

M Ramezani, E Weisbart, J Bauman, A Singh, J Yong… - Nature …, 2025 - nature.com
A key challenge of the modern genomics era is develo** empirical data-driven
representations of gene function. Here we present the first unbiased morphology-based …

PostFocus: automated selective post-acquisition high-throughput focus restoration using diffusion model for label-free time-lapse microscopy

KL Wu, MJ Montalvo, PS Menon, B Roysam… - …, 2024 - academic.oup.com
Motivation High-throughput time-lapse imaging is a fundamental tool for efficient living cell
profiling at single-cell resolution. Label-free phase-contrast video microscopy enables …

[HTML][HTML] A versatile information retrieval framework for evaluating profile strength and similarity

AA Kalinin, J Arevalo, L Vulliard, E Serrano, H Tsang… - bioRxiv, 2024 - ncbi.nlm.nih.gov
In profiling assays, thousands of biological properties are measured in a single test, yielding
biological discoveries by capturing the state of a cell population, often at the single-cell level …

A morphology and secretome map of pyroptosis

MJ Lippincott, J Tomkinson, D Bunten, M Mohammadi… - bioRxiv, 2024 - biorxiv.org
Pyroptosis represents one type of Programmed Cell Death (PCD). It is a form of inflammatory
cell death that is canonically defined by caspase-1 cleavage and Gasdermin-mediated …

Morphological map of under-and over-expression of genes in human cells

SN Chandrasekaran, E Alix, J Arevalo, A Borowa… - bioRxiv, 2024 - biorxiv.org
Cell Painting images offer valuable insights into the state of a cell and enable many
biological applications, but publicly available arrayed datasets only include hundreds of …

Live Cell Painting: image-based profiling in live cells using Acridine Orange

F Garcia-Fossa, T Moraes-Lacerda… - bioRxiv, 2024 - biorxiv.org
Image-based profiling has been used to analyze cell health, drug mechanism of action,
CRISPR-edited cells, and overall cytotoxicity. Cell Painting is a broadly used image-based …