The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

KM Harlen, LS Churchman - Nature reviews Molecular cell biology, 2017 - nature.com
The carboxy-terminal domain (CTD) extends from the largest subunit of RNA polymerase II
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …

Regulation of nucleosome dynamics by histone modifications

GE Zentner, S Henikoff - Nature structural & molecular biology, 2013 - nature.com
Chromatin is a dynamic structure that must respond to myriad stimuli to regulate access to
DNA, and chemical modification of histones is a major means by which the cell modulates …

The RNA polymerase II carboxy-terminal domain (CTD) code

D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …

The RNA polymerase II CTD coordinates transcription and RNA processing

JP Hsin, JL Manley - Genes & development, 2012 - genesdev.cshlp.org
The C-terminal domain (CTD) of the RNA polymerase II largest subunit consists of multiple
heptad repeats (consensus Tyr1–Ser2–Pro3–Thr4–Ser5–Pro6–Ser7), varying in number …

Structural and functional specificity of H3K36 methylation

UTF Lam, BKY Tan, JJX Poh, ES Chen - Epigenetics & Chromatin, 2022 - Springer
The methylation of histone H3 at lysine 36 (H3K36me) is essential for maintaining genomic
stability. Indeed, this methylation mark is essential for proper transcription, recombination …

The Paf1 complex: a keystone of nuclear regulation operating at the interface of transcription and chromatin

AM Francette, SA Tripplehorn, KM Arndt - Journal of molecular biology, 2021 - Elsevier
The regulation of transcription by RNA polymerase II is closely intertwined with the
regulation of chromatin structure. A host of proteins required for the disassembly …

Chromatin and transcription in yeast

OJ Rando, F Winston - Genetics, 2012 - academic.oup.com
Understanding the mechanisms by which chromatin structure controls eukaryotic
transcription has been an intense area of investigation for the past 25 years. Many of the key …

Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes

S Venkatesh, M Smolle, H Li, MM Gogol, M Saint… - Nature, 2012 - nature.com
Set2-mediated methylation of histone H3 at Lys 36 (H3K36me) is a co-transcriptional event
that is necessary for the activation of the Rpd3S histone deacetylase complex, thereby …

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

M Smolle, S Venkatesh, MM Gogol, H Li… - Nature structural & …, 2012 - nature.com
Set2-mediated methylation of histone H3 Lys36 (H3K36) is a mark associated with the
coding sequences of actively transcribed genes, but it has a negative role during …

Combinatorial complexity in chromatin structure and function: revisiting the histone code

OJ Rando - Current opinion in genetics & development, 2012 - Elsevier
Covalent modifications of histone proteins play key roles in transcription, DNA repair,
recombination, and other such processes. Over a hundred histone modifications have been …