Plant organellar genomes: much done, much more to do

J Wang, S Kan, X Liao, J Zhou, LR Tembrock… - Trends in plant …, 2024 - cell.com
Plastids and mitochondria are the only organelles that possess genomes of endosymbiotic
origin. In recent decades, advances in sequencing technologies have contributed to a …

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

A Zhu, W Guo, S Gupta, W Fan, JP Mower - New Phytologist, 2016 - Wiley Online Library
Rates of nucleotide substitution were previously shown to be several times slower in the
plastid inverted repeat (IR) compared with single‐copy (SC) regions, suggesting that the IR …

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

S Wicke, GM Schneeweiss, CW Depamphilis… - Plant molecular …, 2011 - Springer
This review bridges functional and evolutionary aspects of plastid chromosome architecture
in land plants and their putative ancestors. We provide an overview on the structure and …

OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes

M Lohse, O Drechsel, R Bock - Current genetics, 2007 - Springer
Mitochondria and plastids are DNA-containing cell organelles whose genomes occur at high
copy numbers per cell. Organellar genomes vary greatly in size ranging from approximately …

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

RK Jansen, Z Cai, LA Raubeson… - Proceedings of the …, 2007 - National Acad Sciences
Angiosperms are the largest and most successful clade of land plants with> 250,000 species
distributed in nearly every terrestrial habitat. Many phylogenetic studies have been based on …

Plastid genomes of seed plants

RK Jansen, TA Ruhlman - Genomics of chloroplasts and mitochondria, 2012 - Springer
The field of comparative plastid genomics has burgeoned during the past decade, largely
due to the availability of rapid, less expensive genome sequencing technologies. Currently …

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates

ML Weng, JC Blazier, M Govindu… - Molecular biology and …, 2014 - academic.oup.com
Geraniaceae plastid genomes are highly rearranged, and each of the four genera already
sequenced in the family has a distinct genome organization. This study reports plastid …

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

J Qian, J Song, H Gao, Y Zhu, J Xu, X Pang, H Yao… - PloS one, 2013 - journals.plos.org
Salvia miltiorrhiza is an important medicinal plant with great economic and medicinal value.
The complete chloroplast (cp) genome sequence of Salvia miltiorrhiza, the first sequenced …

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

AJ Alverson, XX Wei, DW Rice, DB Stern… - Molecular biology …, 2010 - academic.oup.com
The mitochondrial genomes of seed plants are unusually large and vary in size by at least
an order of magnitude. Much of this variation occurs within a single family, the …