The genetics of inbreeding depression

D Charlesworth, JH Willis - Nature reviews genetics, 2009 - nature.com
Inbreeding depression—the reduced survival and fertility of offspring of related individuals—
occurs in wild animal and plant populations as well as in humans, indicating that genetic …

Effective population size and patterns of molecular evolution and variation

B Charlesworth - Nature Reviews Genetics, 2009 - nature.com
The effective size of a population, N e, determines the rate of change in the composition of a
population caused by genetic drift, which is the random sampling of genetic variants in a …

Efficient ancestry and mutation simulation with msprime 1.0

F Baumdicker, G Bisschop, D Goldstein, G Gower… - Genetics, 2022 - academic.oup.com
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …

Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication

X Feng, Q Chen, W Wu, J Wang, G Li, S Xu… - Nature …, 2024 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, events are widespread and
significant in the evolutionary history of angiosperms. However, empirical evidence for …

The population genetics of structural variants in grapevine domestication

Y Zhou, A Minio, M Massonnet, E Solares, Y Lv… - Nature plants, 2019 - nature.com
Structural variants (SVs) are a largely unexplored feature of plant genomes. Little is known
about the type and size of SVs, their distribution among individuals and, especially, their …

The genetic cost of Neanderthal introgression

K Harris, R Nielsen - Genetics, 2016 - academic.oup.com
Abstract Approximately 2–4% of genetic material in human populations outside Africa is
derived from Neanderthals who interbred with anatomically modern humans. Recent studies …

Searching for missing heritability: designing rare variant association studies

O Zuk, SF Schaffner, K Samocha, R Do… - Proceedings of the …, 2014 - pnas.org
Genetic studies have revealed thousands of loci predisposing to hundreds of human
diseases and traits, revealing important biological pathways and defining novel therapeutic …

Viruses are a dominant driver of protein adaptation in mammals

D Enard, L Cai, C Gwennap, DA Petrov - elife, 2016 - elifesciences.org
Viruses interact with hundreds to thousands of proteins in mammals, yet adaptation against
viruses has only been studied in a few proteins specialized in antiviral defense. Whether …

Recommendations for improving statistical inference in population genomics

P Johri, CF Aquadro, M Beaumont, B Charlesworth… - PLoS …, 2022 - journals.plos.org
The field of population genomics has grown rapidly in response to the recent advent of
affordable, large-scale sequencing technologies. As opposed to the situation during the …

Identification of deleterious mutations within three human genomes

S Chun, JC Fay - Genome research, 2009 - genome.cshlp.org
Each human carries a large number of deleterious mutations. Together, these mutations
make a significant contribution to human disease. Identification of deleterious mutations …