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The sponge holobiont in a changing ocean: from microbes to ecosystems
The recognition that all macroorganisms live in symbiotic association with microbial
communities has opened up a new field in biology. Animals, plants, and algae are now …
communities has opened up a new field in biology. Animals, plants, and algae are now …
Recent advances in genomic DNA sequencing of microbial species from single cells
RS Lasken, JS McLean - Nature Reviews Genetics, 2014 - nature.com
The vast majority of microbial species remain uncultivated and, until recently, about half of
all known bacterial phyla were identified only from their 16S ribosomal RNA gene sequence …
all known bacterial phyla were identified only from their 16S ribosomal RNA gene sequence …
PHASTER: a better, faster version of the PHAST phage search tool
Abstract PHASTER (PHAge Search Tool–Enhanced Release) is a significant upgrade to the
popular PHAST web server for the rapid identification and annotation of prophage …
popular PHAST web server for the rapid identification and annotation of prophage …
VirSorter: mining viral signal from microbial genomic data
Viruses of microbes impact all ecosystems where microbes drive key energy and substrate
transformations including the oceans, humans and industrial fermenters. However, despite …
transformations including the oceans, humans and industrial fermenters. However, despite …
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
The ecological importance of viruses is now widely recognized, yet our limited knowledge of
viral sequence space and virus–host interactions precludes accurate prediction of their roles …
viral sequence space and virus–host interactions precludes accurate prediction of their roles …
IMNGS: a comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies
I Lagkouvardos, D Joseph, M Kapfhammer, S Giritli… - Scientific reports, 2016 - nature.com
Abstract The SRA (Sequence Read Archive) serves as primary depository for massive
amounts of Next Generation Sequencing data and currently host over 100,000 16S rRNA …
amounts of Next Generation Sequencing data and currently host over 100,000 16S rRNA …
A genomic view of the microbiome of coral reef demosponges
Sponges underpin the productivity of coral reefs, yet few of their microbial symbionts have
been functionally characterised. Here we present an analysis of~ 1200 metagenome …
been functionally characterised. Here we present an analysis of~ 1200 metagenome …
Characterization of a sponge microbiome using an integrative genome-centric approach
Marine sponges often host diverse and species-specific communities of microorganisms that
are critical for host health. Previous functional genomic investigations of the sponge …
are critical for host health. Previous functional genomic investigations of the sponge …
Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses
Sponges are the oldest known extant animal-microbe symbiosis. These ubiquitous benthic
animals play an important role in marine ecosystems in the cycling of dissolved organic …
animals play an important role in marine ecosystems in the cycling of dissolved organic …
The HMA-LMA dichotomy revisited: an electron microscopical survey of 56 sponge species
V Gloeckner, M Wehrl, L Moitinho-Silva… - The Biological …, 2014 - journals.uchicago.edu
The dichotomy between high microbial abundance (HMA) and low microbial abundance
(LMA) sponges has been long recognized. In the present study, 56 sponge species from …
(LMA) sponges has been long recognized. In the present study, 56 sponge species from …