Modeling molecular interactions in water: From pairwise to many-body potential energy functions
Almost 50 years have passed from the first computer simulations of water, and a large
number of molecular models have been proposed since then to elucidate the unique …
number of molecular models have been proposed since then to elucidate the unique …
Classical electrostatics for biomolecular simulations
Classical atomistic simulations, also known as molecular mechanics simulations, use simple
potential-energy functions to model molecular systems at the atomic level. In this …
potential-energy functions to model molecular systems at the atomic level. In this …
Corrosion inhibition of mild steel in 1M HCl by D-glucose derivatives of dihydropyrido [2, 3-d: 6, 5-d′] dipyrimidine-2, 4, 6, 8 (1H, 3H, 5H, 7H)-tetraone
D-glucose derivatives of dihydropyrido-[2, 3-d: 6, 5-d′]-dipyrimidine-2, 4, 6, 8 (1H, 3H, 5H,
7H)-tetraone (GPHs) have been synthesized and investigated as corrosion inhibitors for mild …
7H)-tetraone (GPHs) have been synthesized and investigated as corrosion inhibitors for mild …
Machine learning force field parameters from ab initio data
Machine learning (ML) techniques with the genetic algorithm (GA) have been applied to
determine a polarizable force field parameters using only ab initio data from quantum …
determine a polarizable force field parameters using only ab initio data from quantum …
Classical Pauli repulsion: An anisotropic, atomic multipole model
Pauli repulsion is a key component of any theory of intermolecular interactions. Although
Pauli or exchange repulsion has its origin in the quantum mechanical nature of electrons, it …
Pauli or exchange repulsion has its origin in the quantum mechanical nature of electrons, it …
LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular Mechanics Model with Distributed Multipole-Based Electrostatic Embedding for Highly Efficient Surface …
S Polonius, O Zhuravel, B Bachmair… - Journal of Chemical …, 2023 - ACS Publications
We present a theoretical framework for a hybrid linear vibronic coupling model
electrostatically embedded into a molecular mechanics environment, termed the linear …
electrostatically embedded into a molecular mechanics environment, termed the linear …
General model for treating short-range electrostatic penetration in a molecular mechanics force field
Classical molecular mechanics force fields typically model interatomic electrostatic
interactions with point charges or multipole expansions, which can fail for atoms in close …
interactions with point charges or multipole expansions, which can fail for atoms in close …
[HTML][HTML] How good are polarizable and flexible models for water: Insights from a many-body perspective
We present a systematic analysis of state-of-the-art polarizable and flexible water models
from a many-body perspective, with a specific focus on their ability to represent the Born …
from a many-body perspective, with a specific focus on their ability to represent the Born …
LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields
We introduce an initial implementation of the LICHEM software package. LICHEM can
interface with Gaussian, PSI4, NWChem, TINKER, and TINKER–HP to enable QM/MM …
interface with Gaussian, PSI4, NWChem, TINKER, and TINKER–HP to enable QM/MM …
Chemical transformations and transport phenomena at interfaces
Interfaces, the boundary that separates two or more chemical compositions and/or phases of
matter, alters basic chemical and physical properties including the thermodynamics of …
matter, alters basic chemical and physical properties including the thermodynamics of …