Brain templates and atlases

AC Evans, AL Janke, DL Collins, S Baillet - Neuroimage, 2012 - Elsevier
The core concept within the field of brain map** is the use of a standardized, or
“stereotaxic”, 3D coordinate frame for data analysis and reporting of findings from …

[HTML][HTML] Superficial white matter: A review on the dMRI analysis methods and applications

M Guevara, P Guevara, C Román, JF Mangin - NeuroImage, 2020 - Elsevier
The map** of human brain connections is still an on going task. Unlike deep white matter
(DWM), which has been extensively studied and well documented, superficial white matter …

An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan

F Zhang, Y Wu, I Norton, L Rigolo, Y Rathi, N Makris… - Neuroimage, 2018 - Elsevier
This work presents an anatomically curated white matter atlas to enable consistent white
matter tract parcellation across different populations. Leveraging a well-established …

Automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy

A Yendiki, P Panneck, P Srinivasan… - Frontiers in …, 2011 - frontiersin.org
We have developed a method for automated probabilistic reconstruction of a set of major
white-matter pathways from diffusion-weighted MR images. Our method is called TRACULA …

Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome

C Davatzikos, S Rathore, S Bakas… - Journal of medical …, 2018 - spiedigitallibrary.org
The growth of multiparametric imaging protocols has paved the way for quantitative imaging
phenotypes that predict treatment response and clinical outcome, reflect underlying cancer …

Atlasing location, asymmetry and inter-subject variability of white matter tracts in the human brain with MR diffusion tractography

MT De Schotten, A Bizzi, F Dell'Acqua, M Allin… - Neuroimage, 2011 - Elsevier
The purpose of this study is to create a white matter atlas of the human brain using diffusion
tensor imaging (DTI) tractography and to describe the constant and variable features of the …

Quickbundles, a method for tractography simplification

E Garyfallidis, M Brett, MM Correia… - Frontiers in …, 2012 - frontiersin.org
Diffusion MR data sets produce large numbers of streamlines which are hard to visualize,
interact with, and interpret in a clinically acceptable time scale, despite numerous proposed …

Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation

F Zhang, SC Karayumak, N Hoffmann, Y Rathi… - Medical image …, 2020 - Elsevier
White matter tract segmentation, ie identifying tractography fibers (streamline trajectories)
belonging to anatomically meaningful fiber tracts, is an essential step to enable tract …

The white matter query language: a novel approach for describing human white matter anatomy

D Wassermann, N Makris, Y Rathi, M Shenton… - Brain Structure and …, 2016 - Springer
We have developed a novel method to describe human white matter anatomy using an
approach that is both intuitive and simple to use, and which automatically extracts white …

[HTML][HTML] Using diffusion MRI data acquired with ultra-high gradient strength to improve tractography in routine-quality data

C Maffei, C Lee, M Planich, M Ramprasad, N Ravi… - Neuroimage, 2021 - Elsevier
The development of scanners with ultra-high gradient strength, spearheaded by the Human
Connectome Project, has led to dramatic improvements in the spatial, angular, and diffusion …