A new approach for efficient genotype imputation using information from relatives
Background Genotype imputation can help reduce genoty** costs particularly for
implementation of genomic selection. In applications entailing large populations, recovering …
implementation of genomic selection. In applications entailing large populations, recovering …
Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications
In livestock, many studies have reported the results of imputation to 50k single nucleotide
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
Optimizing low-cost genoty** and imputation strategies for genomic selection in Atlantic salmon
S Tsairidou, A Hamilton, D Robledo… - G3: Genes …, 2020 - academic.oup.com
Genomic selection enables cumulative genetic gains in key production traits such as
disease resistance, playing an important role in the economic and environmental …
disease resistance, playing an important role in the economic and environmental …
Genotype imputation to improve the cost-efficiency of genomic selection in farmed Atlantic salmon
HY Tsai, O Matika, SMK Edwards… - G3: Genes, genomes …, 2017 - academic.oup.com
Genomic selection uses genome-wide marker information to predict breeding values for
traits of economic interest, and is more accurate than pedigree-based methods. The …
traits of economic interest, and is more accurate than pedigree-based methods. The …
Genome-Wide Association Study and Cost-Efficient Genomic Predictions for Growth and Fillet Yield in Nile Tilapia (Oreochromis niloticus)
GM Yoshida, JP Lhorente, K Correa… - G3: Genes …, 2019 - academic.oup.com
Fillet yield (FY) and harvest weight (HW) are economically important traits in Nile tilapia
production. Genetic improvement of these traits, especially for FY, are lacking, due to the …
production. Genetic improvement of these traits, especially for FY, are lacking, due to the …
Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle
Background The use of whole-genome sequence data can lead to higher accuracy in
genome-wide association studies and genomic predictions. However, to benefit from whole …
genome-wide association studies and genomic predictions. However, to benefit from whole …
Genomic signatures of adaptive introgression from European mouflon into domestic sheep
Mouflon (Ovis aries musimon) became extinct from mainland Europe after the Neolithic, but
remnant populations from the Mediterranean islands of Corsica and Sardinia have been …
remnant populations from the Mediterranean islands of Corsica and Sardinia have been …
Linkage disequilibrium over short physical distances measured in sheep using a high‐density SNP chip
The extent of linkage disequilibrium (LD) between genetic loci has implications for both
association studies and the accuracy of genomic prediction. To characterise the persistence …
association studies and the accuracy of genomic prediction. To characterise the persistence …
Estimation of linkage disequilibrium in four US pig breeds
YM Badke, RO Bates, CW Ernst, C Schwab, JP Steibel - BMC genomics, 2012 - Springer
Background The success of marker assisted selection depends on the amount of linkage
disequilibrium (LD) across the genome. To implement marker assisted selection in the swine …
disequilibrium (LD) across the genome. To implement marker assisted selection in the swine …
Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies
Background Use of whole-genome sequence data (WGS) is expected to improve
identification of quantitative trait loci (QTL). However, this requires imputation to WGS, often …
identification of quantitative trait loci (QTL). However, this requires imputation to WGS, often …