Integrating mechanism-based modeling with biomedical imaging to build practical digital twins for clinical oncology

C Wu, G Lorenzo, DA Hormuth, EABF Lima… - Biophysics …, 2022 - pubs.aip.org
Digital twins employ mathematical and computational models to virtually represent a
physical object (eg, planes and human organs), predict the behavior of the object, and …

The good, the bad, and the ugly: neutrophils, angiogenesis, and cancer

I Ozel, I Duerig, M Domnich, S Lang, E Pylaeva… - Cancers, 2022 - mdpi.com
Simple Summary Tumor angiogenesis is one of the most critical steps in the progression of
cancer. Owing to its fundamental role in tumor growth and metastasis, tumor angiogenesis is …

Agent-based modeling in cancer biomedicine: applications and tools for calibration and validation

N Cogno, C Axenie, R Bauer… - Cancer biology & …, 2024 - Taylor & Francis
Computational models are not just appealing because they can simulate and predict the
development of biological phenomena across multiple spatial and temporal scales, but also …

Anti-cancer and immunomodulatory evaluation of new nicotinamide derivatives as potential VEGFR-2 inhibitors and apoptosis inducers: in vitro and in silico studies

RG Yousef, A Elwan, IMM Gobaara… - Journal of Enzyme …, 2022 - Taylor & Francis
Abstract New nicotinamide derivatives 6, 7, 10, and 11 were designed and synthesised
based on the essential features of the VEGFR-2 inhibitors. Compound 10 revealed the …

Molecular mechanisms of extracellular-ATP-mediated colorectal cancer progression: Implication of purinergic receptors-mediated nucleocytoplasmic shuttling of HuR

AAS Shatat, EM Mahgoup, MH Rashed, IG Saleh… - Purinergic …, 2024 - Springer
One of the leading causes of cancer-related deaths worldwide is colorectal cancer (CRC).
Extracellular ATP (e-ATP) and purinergic receptors (P2R) play a central role in CRC …

[HTML][HTML] Biologically-based mathematical modeling of tumor vasculature and angiogenesis via time-resolved imaging data

DA Hormuth, CM Phillips, C Wu, EABF Lima… - Cancers, 2021 - mdpi.com
Simple Summary The recruitment of new vasculature via angiogenesis is a critical
component of tumor development, which fundamentally influences tumor growth and …

Systems biology of angiogenesis signaling: Computational models and omics

Y Zhang, H Wang, RHM Oliveira… - WIREs mechanisms …, 2022 - Wiley Online Library
Angiogenesis is a highly regulated multiscale process that involves a plethora of cells, their
cellular signal transduction, activation, proliferation, differentiation, as well as their …

Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth

EABF Lima, D Faghihi, R Philley, J Yang… - PLoS Computational …, 2021 - journals.plos.org
Hybrid multiscale agent-based models (ABMs) are unique in their ability to simulate
individual cell interactions and microenvironmental dynamics. Unfortunately, the high …

[HTML][HTML] Agent-based approaches for biological modeling in oncology: A literature review

S Stephan, S Galland, OL Narsis, K Shoji… - Artificial Intelligence in …, 2024 - Elsevier
Context: Computational modeling involves the use of computer simulations and models to
study and understand real-world phenomena. Its application is particularly relevant in the …

Optimal control of cytotoxic and antiangiogenic therapies on prostate cancer growth

P Colli, H Gomez, G Lorenzo, G Marinoschi… - … Models and Methods …, 2021 - World Scientific
Prostate cancer can be lethal in advanced stages, for which chemotherapy may become the
only viable therapeutic option. While there is no clear clinical management strategy fitting all …