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The molecular basis for cellular function of intrinsically disordered protein regions
Intrinsically disordered protein regions exist in a collection of dynamic interconverting
conformations that lack a stable 3D structure. These regions are structurally heterogeneous …
conformations that lack a stable 3D structure. These regions are structurally heterogeneous …
Overview of AlphaFold2 and breakthroughs in overcoming its limitations.
L Wang, Z Wen, SW Liu, L Zhang, C Finley… - Computers in Biology …, 2024 - Elsevier
Abstract Predicting three-dimensional (3D) protein structures has been challenging for
decades. The emergence of AlphaFold2 (AF2), a deep learning-based machine learning …
decades. The emergence of AlphaFold2 (AF2), a deep learning-based machine learning …
Conformational ensembles of the human intrinsically disordered proteome
Intrinsically disordered proteins and regions (collectively, IDRs) are pervasive across
proteomes in all kingdoms of life, help to shape biological functions and are involved in …
proteomes in all kingdoms of life, help to shape biological functions and are involved in …
Design of intrinsically disordered protein variants with diverse structural properties
Intrinsically disordered proteins (IDPs) perform a broad range of functions in biology,
suggesting that the ability to design IDPs could help expand the repertoire of proteins with …
suggesting that the ability to design IDPs could help expand the repertoire of proteins with …
AIUPred: combining energy estimation with deep learning for the enhanced prediction of protein disorder
Intrinsically disordered proteins and protein regions (IDPs/IDRs) carry out important
biological functions without relying on a single well-defined conformation. As these proteins …
biological functions without relying on a single well-defined conformation. As these proteins …
Identification of plant transcriptional activation domains
Gene expression in Arabidopsis is regulated by more than 1,900 transcription factors (TFs),
which have been identified genome-wide by the presence of well-conserved DNA-binding …
which have been identified genome-wide by the presence of well-conserved DNA-binding …
SOURSOP: A Python package for the analysis of simulations of intrinsically disordered proteins
Conformational heterogeneity is a defining hallmark of intrinsically disordered proteins and
protein regions (IDRs). The functions of IDRs and the emergent cellular phenotypes they …
protein regions (IDRs). The functions of IDRs and the emergent cellular phenotypes they …
[HTML][HTML] Biomolecular NMR spectroscopy in the era of artificial intelligence
Biomolecular nuclear magnetic resonance (NMR) spectroscopy and artificial intelligence
(AI) have a burgeoning synergy. Deep learning-based structural predictors have forever …
(AI) have a burgeoning synergy. Deep learning-based structural predictors have forever …
Differential Effects of Sequence-Local versus Nonlocal Charge Patterns on Phase Separation and Conformational Dimensions of Polyampholytes as Model …
Conformational properties of intrinsically disordered proteins (IDPs) are governed by a
sequence-ensemble relationship. To differentiate the impact of sequence-local versus …
sequence-ensemble relationship. To differentiate the impact of sequence-local versus …
Programmability and biomedical utility of intrinsically-disordered protein polymers
MC Giraldo-Castano, KA Littlejohn… - Advanced Drug Delivery …, 2024 - Elsevier
Intrinsically disordered proteins (IDPs) exhibit molecular-level conformational dynamics that
are functionally harnessed across a wide range of fascinating biological phenomena. The …
are functionally harnessed across a wide range of fascinating biological phenomena. The …