Biological network analysis with deep learning

G Muzio, L O'Bray, K Borgwardt - Briefings in bioinformatics, 2021 - academic.oup.com
Recent advancements in experimental high-throughput technologies have expanded the
availability and quantity of molecular data in biology. Given the importance of interactions in …

A guide to conquer the biological network era using graph theory

M Koutrouli, E Karatzas, D Paez-Espino… - … in bioengineering and …, 2020 - frontiersin.org
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …

Modelling transmission and control of the COVID-19 pandemic in Australia

SL Chang, N Harding, C Zachreson, OM Cliff… - Nature …, 2020 - nature.com
There is a continuing debate on relative benefits of various mitigation and suppression
strategies aimed to control the spread of COVID-19. Here we report the results of agent …

NetCoMi: network construction and comparison for microbiome data in R

S Peschel, CL Müller, E Von Mutius… - Briefings in …, 2021 - academic.oup.com
Motivation Estimating microbial association networks from high-throughput sequencing data
is a common exploratory data analysis approach aiming at understanding the complex …

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

B Li, Y Yang, L Ma, F Ju, F Guo, JM Tiedje… - The ISME …, 2015 - academic.oup.com
A metagenomic approach and network analysis was used to investigate the wide-spectrum
profiles of antibiotic resistance genes (ARGs) and their co-occurrence patterns in 50 …

Adaptation, learning, and optimization over networks

AH Sayed - Foundations and Trends® in Machine Learning, 2014 - nowpublishers.com
This work deals with the topic of information processing over graphs. The presentation is
largely self-contained and covers results that relate to the analysis and design of multi-agent …

Using network analysis to explore co-occurrence patterns in soil microbial communities

A Barberán, ST Bates, EO Casamayor… - The ISME journal, 2012 - academic.oup.com
Exploring large environmental datasets generated by high-throughput DNA sequencing
technologies requires new analytical approaches to move beyond the basic inventory …

Community detection in graphs

S Fortunato - Physics reports, 2010 - Elsevier
The modern science of networks has brought significant advances to our understanding of
complex systems. One of the most relevant features of graphs representing real systems is …

[หนังสือ][B] Recent advances in graph partitioning

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