Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology

CA Brosey, JA Tainer - Current opinion in structural biology, 2019 - Elsevier
Highlights•SAXS captures architecture and dynamics to elucidate molecular
ensembles.•SAXS advances now probe key thermodynamic and kinetic properties of …

Drug Discovery for Mycobacterium tuberculosis Using Structure-Based Computer-Aided Drug Design Approach

MA Ejalonibu, SA Ogundare, AA Elrashedy… - International Journal of …, 2021 - mdpi.com
Develo** new, more effective antibiotics against resistant Mycobacterium tuberculosis that
inhibit its essential proteins is an appealing strategy for combating the global tuberculosis …

In Silico Strategies in Tuberculosis Drug Discovery

SJY Macalino, JB Billones, VG Organo, MCO Carrillo - Molecules, 2020 - mdpi.com
Tuberculosis (TB) remains a serious threat to global public health, responsible for an
estimated 1.5 million mortalities in 2018. While there are available therapeutics for this …

Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein

D Girodat, AK Pati, DS Terry… - PLOS Computational …, 2020 - journals.plos.org
Molecular Dynamics (MD) simulations seek to provide atomic-level insights into
conformationally dynamic biological systems at experimentally relevant time resolutions …

SAXS-guided enhanced unbiased sampling for structure determination of proteins and complexes

C Zhao, D Shukla - Scientific reports, 2018 - nature.com
Molecular simulations can be utilized to predict protein structure ensembles and dynamics,
though sufficient sampling of molecular ensembles and identification of key biologically …

Small angle X-ray scattering analysis of thermophilic cytochrome P450 CYP119 and the effects of the N-terminal histidine tag

EK Doğru, T Sakallı, G Liu, Z Sayers… - International journal of …, 2024 - Elsevier
Combining size exclusion chromatography-small angle X-ray scattering (SEC-SAXS) and
molecular dynamics (MD) analysis is a promising approach to investigate protein behavior …

Protein structure refinement guided by atomic packing frustration analysis

M Chen, X Chen, S **, W Lu, X Lin… - The Journal of Physical …, 2020 - ACS Publications
Recent advances in machine learning, bioinformatics, and the understanding of the folding
problem have enabled efficient predictions of protein structures with moderate accuracy …

Modeling protein structural ensembles using AWSEM-Suite

S ** - 2023 - search.proquest.com
Proteins are the driving force behind most cellular processes. Traditional methods for
determining protein structure are limited to probing only a few static structures of a given …

Monte Carlo sampling of protein folding by combining an all-atom physics-based model with a native state bias

Y Wang, P Tian, W Boomsma… - The Journal of Physical …, 2018 - ACS Publications
Energy landscape theory suggests that native interactions are a major determinant of the
folding mechanism of a protein. Thus, structure-based (Go̅) models have, aided by coarse …

BioSAXS を活用した生体高分子の溶液構造状態推定

清水伸隆 - 日本結晶学会誌, 2023 - jstage.jst.go.jp
抄録 Small-angle X-ray scattering (SAXS) for solution samples of biological
macromolecules, recently called BioSAXS, has been used to estimate the conformational …