[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems

J Pawlowski, M Kelly-Quinn, F Altermatt… - Science of the Total …, 2018 - Elsevier
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …

Plant DNA barcoding: from gene to genome

X Li, Y Yang, RJ Henry, M Rossetto, Y Wang… - Biological …, 2015 - Wiley Online Library
ABSTRACT DNA barcoding is currently a widely used and effective tool that enables rapid
and accurate identification of plant species; however, none of the available loci work across …

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

N Puillandre, A Lambert, S Brouillet… - Molecular ecology, 2012 - Wiley Online Library
Within uncharacterized groups, DNA barcodes, short DNA sequences that are present in a
wide range of species, can be used to assign organisms into species. We propose an …

Identification of birds through DNA barcodes

PDN Hebert, MY Stoeckle, TS Zemlak, CM Francis - PLoS biology, 2004 - journals.plos.org
Short DNA sequences from a standardized region of the genome provide a DNA barcode for
identifying species. Compiling a public library of DNA barcodes linked to named specimens …

Sequence-based species delimitation for the DNA taxonomy of undescribed insects

J Pons, TG Barraclough, J Gomez-Zurita… - Systematic …, 2006 - academic.oup.com
Cataloging the very large number of undescribed species of insects could be greatly
accelerated by automated DNA based approaches, but procedures for large-scale species …

Use of DNA barcodes to identify flowering plants

WJ Kress, KJ Wurdack, EA Zimmer… - Proceedings of the …, 2005 - National Acad Sciences
Methods for identifying species by using short orthologous DNA sequences, known as “DNA
barcodes,” have been proposed and initiated to facilitate biodiversity studies, identify …

Towards integrative taxonomy

B Dayrat - Biological journal of the Linnean society, 2005 - academic.oup.com
Delineating species boundaries correctly is crucial to the discovery of life's diversity because
it determines whether or not different individual organisms are members of the same entity …

DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics

M Hajibabaei, GAC Singer, PDN Hebert, DA Hickey - TRENDS in Genetics, 2007 - cell.com
DNA barcoding aims to provide an efficient method for species-level identifications and, as
such, will contribute powerfully to taxonomic and biodiversity research. As the number of …

DNA barcoding the floras of biodiversity hotspots

R Lahaye, M Van der Bank, D Bogarin… - Proceedings of the …, 2008 - National Acad Sciences
DNA barcoding is a technique in which species identification is performed by using DNA
sequences from a small fragment of the genome, with the aim of contributing to a wide range …

DNA barcoding: promise and pitfalls

C Moritz, C Cicero - PLoS biology, 2004 - journals.plos.org
PLoS Biology| www. plosbiology. org 1530 described extant species within a given genus.
Accurate diagnosis depends on low intraspecific variation compared with that between …