Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data

Z Pang, G Zhou, J Ewald, L Chang, O Hacariz… - Nature protocols, 2022 - nature.com
Liquid chromatography coupled with high-resolution mass spectrometry (LC–HRMS) has
become a workhorse in global metabolomics studies with growing applications across …

Applications of multi‐omics analysis in human diseases

C Chen, J Wang, D Pan, X Wang, Y Xu, J Yan… - MedComm, 2023 - Wiley Online Library
Multi‐omics usually refers to the crossover application of multiple high‐throughput screening
technologies represented by genomics, transcriptomics, single‐cell transcriptomics …

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation

Z Pang, Y Lu, G Zhou, F Hui, L Xu, C Viau… - Nucleic acids …, 2024 - academic.oup.com
We introduce MetaboAnalyst version 6.0 as a unified platform for processing, analyzing, and
interpreting data from targeted as well as untargeted metabolomics studies using liquid …

Web-based multi-omics integration using the Analyst software suite

JD Ewald, G Zhou, Y Lu, J Kolic, C Ellis, JD Johnson… - Nature …, 2024 - nature.com
The growing number of multi-omics studies demands clear conceptual workflows coupled
with easy-to-use software tools to facilitate data analysis and interpretation. This protocol …

OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics

G Zhou, Z Pang, Y Lu, J Ewald, J **a - Nucleic acids research, 2022 - academic.oup.com
Researchers are increasingly seeking to interpret molecular data within a multi-omics
context to gain a more comprehensive picture of their study system. OmicsNet (www …

Redefining modern food analysis: Significance of omics analytical techniques integration, chemometrics and bioinformatics

CO Okoye, H Jiang, M Nazar, XL Tan, J Jiang - TrAC Trends in Analytical …, 2024 - Elsevier
Food analysis is a scientific discipline that has evolved from traditional methods into
sophisticated approaches due to advances in analytical chemistry and modern …

ConSIG: consistent discovery of molecular signature from OMIC data

F Li, J Yin, M Lu, Q Yang, Z Zeng, B Zhang… - Briefings in …, 2022 - academic.oup.com
The discovery of proper molecular signature from OMIC data is indispensable for
determining biological state, physiological condition, disease etiology, and therapeutic …

'Multi-omics' data integration: applications in probiotics studies

ID Kwoji, OA Aiyegoro, M Okpeku, MA Adeleke - npj Science of Food, 2023 - nature.com
The concept of probiotics is witnessing increasing attention due to its benefits in influencing
the host microbiome and the modulation of host immunity through the strengthening of the …

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

T Liu, P Salguero, M Petek… - Nucleic Acids …, 2022 - academic.oup.com
PaintOmics is a web server for the integrative analysis and visualisation of multi-omics
datasets using biological pathway maps. PaintOmics 4 has several notable updates that …

[PDF][PDF] Current and future directions in network biology

M Zitnik, MM Li, A Wells, K Glass… - Bioinformatics …, 2024 - academic.oup.com
Network biology is an interdisciplinary field bridging computational and biological sciences
that has proved pivotal in advancing the understanding of cellular functions and diseases …