The utility of single nucleotide polymorphism (SNP) data in phylogenetics

AD Leaché, JR Oaks - Annual Review of Ecology, Evolution …, 2017 - annualreviews.org
Resolving the genealogy of life—the phylogenetic relationships that describe the
evolutionary history of species—remains one of the great challenges of systematic biology …

A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

Phylogenomic resolution of the cetacean tree of life using target sequence capture

MR McGowen, G Tsagkogeorga… - Systematic …, 2020 - academic.oup.com
The evolution of cetaceans, from their early transition to an aquatic lifestyle to their
subsequent diversification, has been the subject of numerous studies. However, although …

[PDF][PDF] Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life

PM Hime, AR Lemmon, ECM Lemmon… - Systematic …, 2021 - academic.oup.com
Molecular phylogenies have yielded strong support for many parts of the amphibian Tree of
Life, but poor support for the resolution of deeper nodes, including relationships among …

Frog phylogeny: a time-calibrated, species-level tree based on hundreds of loci and 5,242 species

DM Portik, JW Streicher, JJ Wiens - Molecular Phylogenetics and Evolution, 2023 - Elsevier
Large-scale, time-calibrated phylogenies from supermatrix studies have become crucial for
evolutionary and ecological studies in many groups of organisms. However, in frogs (anuran …

Population genomics: advancing understanding of nature

G Luikart, M Kardos, BK Hand, OP Rajora… - Population genomics …, 2019 - Springer
Population genomics is advancing our understanding of evolution, ecology, conservation,
agriculture, forestry, and human health by allowing new and long-standing questions to be …

Species delimitation, phylogenomics, and biogeography of Sulawesi flying lizards: a diversification history complicated by ancient hybridization, cryptic species, and …

JA Mcguire, X Huang, SB Reilly, DT Iskandar… - Systematic …, 2023 - academic.oup.com
The biota of Sulawesi is noted for its high degree of endemism and for its substantial levels
of in situ biological diversification. While the island's long period of isolation and dynamic …

State of the Amphibia 2020: A review of five years of amphibian research and existing resources

MC Womack, E Steigerwald… - Ichthyology & …, 2022 - meridian.allenpress.com
Amphibians are a clade of over 8,400 species that provide unique research opportunities
and challenges. With amphibians undergoing severe global declines, we posit that …

Phylogenomic support for evolutionary relationships of New World direct-develo** frogs (Anura: Terraranae)

MP Heinicke, AR Lemmon, EM Lemmon… - Molecular phylogenetics …, 2018 - Elsevier
Phylogenomic approaches have proven able to resolve difficult branches in the tree of life.
New World direct-develo** frogs (Terraranae) represent a large evolutionary radiation in …

The macroevolutionary singularity of snakes

PO Title, S Singhal, MC Grundler, GC Costa, RA Pyron… - Science, 2024 - science.org
Snakes and lizards (Squamata) represent a third of terrestrial vertebrates and exhibit
spectacular innovations in locomotion, feeding, and sensory processing. However, the …