Data generation for machine learning interatomic potentials and beyond

M Kulichenko, B Nebgen, N Lubbers, JS Smith… - Chemical …, 2024 - ACS Publications
The field of data-driven chemistry is undergoing an evolution, driven by innovations in
machine learning models for predicting molecular properties and behavior. Recent strides in …

Tautomeric equilibria in relation to pi-electron delocalization

ED Raczyńska, W Kosińska, B Ośmiałowski… - Chemical …, 2005 - ACS Publications
Tautomerism, a particular case of isomerism, plays an important role in modern organic
chemistry, biochemistry, medicinal chemistry, pharmacology, molecular biology, and life …

Quantum chemical investigations on molecular clusters

SR Gadre, SD Yeole, N Sahu - Chemical reviews, 2014 - ACS Publications
A cluster is an aggregate of bound atoms or molecules, intermediate in size between a
molecule and a bulk solid. Clusters of a variety of molecules are receiving increasing …

A smooth, nonsingular, and faithful discretization scheme for polarizable continuum models: The switching/Gaussian approach

AW Lange, JM Herbert - The Journal of chemical physics, 2010 - pubs.aip.org
Polarizable continuum models (PCMs) are a widely used family of implicit solvent models
based on reaction-field theory and boundary-element discretization of the solute/continuum …

Getting into shape: Conformational and supramolecular landscapes in small biomolecules and their hydrated clusters

EG Robertson, JP Simons - Physical Chemistry Chemical Physics, 2001 - pubs.rsc.org
The last few years have seen a very rapid growth in understanding the influence of non-
bonded, particularly hydrogen-bonded interactions, on the shapes and conformations of …

Are thermodynamic cycles necessary for continuum solvent calculation of p K as and reduction potentials?

J Ho - Physical Chemistry Chemical Physics, 2015 - pubs.rsc.org
Continuum solvent calculations of pKas and reduction potentials usually entail the use of a
thermodynamic cycle to express the reaction free energy in terms of gas phase energies and …

Development of a ReaxFF reactive force field for glycine and application to solvent effect and tautomerization

O Rahaman, ACT Van Duin… - The Journal of …, 2011 - ACS Publications
Tautomerization of amino acids between the neutral form (NF) and the zwitterionic form (ZW)
in water has been extensively studied, often using glycine as a model to understand this …

Peptides and proteins in the vapor phase

MF Jarrold - Annual review of physical chemistry, 2000 - annualreviews.org
This article provides a review of recent studies of the properties of unsolvated (and partially
solvated) peptides and proteins. The methods used to produce vapor-phase peptide and …

Chemistry in nanoconfined water

D Munoz-Santiburcio, D Marx - Chemical science, 2017 - pubs.rsc.org
Nanoconfined liquids have extremely different properties from the bulk, which profoundly
affects chemical reactions taking place in nanosolvation. Here, we present extensive ab …

Vibrational signature of charge solvation vs salt bridge isomers of sodiated amino acids in the gas phase

C Kapota, J Lemaire, P Maître… - Journal of the American …, 2004 - ACS Publications
The vibrational spectra of the gaseous sodium complexes of glycine (Gly− Na+) and proline
(Pro− Na+) have been recorded in the spectral range 1150− 2000 cm-1. The complexes …