Extended-spectrum β-lactamases: an update on their characteristics, epidemiology and detection

M Castanheira, PJ Simner… - JAC-antimicrobial …, 2021 - academic.oup.com
Extended-spectrum β-lactamase (ESBL)-producing Gram-negative pathogens are a major
cause of resistance to expanded-spectrum β-lactam antibiotics. Since their discovery in the …

The population genetics of pathogenic Escherichia coli

E Denamur, O Clermont, S Bonacorsi… - Nature Reviews …, 2021 - nature.com
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

Z Zhou, NF Alikhan, K Mohamed, Y Fan… - Genome …, 2020 - genome.cshlp.org
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …

Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

M Touchon, A Perrin, JAM De Sousa, B Vangchhia… - PLoS …, 2020 - journals.plos.org
Escherichia coli is mostly a commensal of birds and mammals, including humans, where it
can act as an opportunistic pathogen. It is also found in water and sediments. We …

Escherichia coli ST1193: following in the footsteps of E. coli ST131

JDD Pitout, G Peirano, L Chen… - Antimicrobial Agents …, 2022 - Am Soc Microbiol
Escherichia coli ST1193 is an emerging global multidrug (MDR) high-risk clone and an
important cause of community-onset urinary and bloodstream infections. ST1193 is imitating …

Rethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults

JNV Martinson, NV Pinkham, GW Peters… - The ISME …, 2019 - academic.oup.com
Longitudinal human gut microbiome datasets generated using community-level, sequence-
based approaches often report a sub-set of long-lived “resident” taxa that rarely, if ever, are …

[HTML][HTML] Language as a problem

F Cummins - Language Sciences, 2021 - Elsevier
The term “language” is used for at least three distinct purposes. The first supports inquiry into
coded message exchange. This has occupied most of the debate within the discipline of …

Increase in the community circulation of ciprofloxacin-resistant Escherichia coli despite reduction in antibiotic prescriptions

V Tchesnokova, L Larson, I Basova… - Communications …, 2023 - nature.com
Background Community circulating gut microbiota is the main reservoir for uropathogenic
Escherichia coli, including those resistant to antibiotics. Ciprofloxacin had been the primary …

Emergence and Dissemination of Extraintestinal Pathogenic High-Risk International Clones of Escherichia coli

B Kocsis, D Gulyás, D Szabó - Life, 2022 - mdpi.com
Multiresistant Escherichia coli has been disseminated worldwide, and it is one of the major
causative agents of nosocomial infections. E. coli has a remarkable and complex genomic …

A one-year genomic investigation of Escherichia coli epidemiology and nosocomial spread at a large US healthcare network

EG Mills, MJ Martin, TL Luo, AC Ong, R Maybank… - Genome medicine, 2022 - Springer
Abstract Background Extra-intestinal pathogenic Escherichia coli (ExPEC) are a leading
cause of bloodstream and urinary tract infections worldwide. Over the last two decades …