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Next-generation data filtering in the genomics era
Genomic data are ubiquitous across disciplines, from agriculture to biodiversity, ecology,
evolution and human health. However, these datasets often contain noise or errors and are …
evolution and human health. However, these datasets often contain noise or errors and are …
Genetic variation across and within individuals
Germline variation and somatic mutation are intricately connected and together shape
human traits and disease risks. Germline variants are present from conception, but they vary …
human traits and disease risks. Germline variants are present from conception, but they vary …
Analysis and benchmarking of small and large genomic variants across tandem repeats
Tandem repeats (TRs) are highly polymorphic in the human genome, have thousands of
associated molecular traits and are linked to over 60 disease phenotypes. However, they …
associated molecular traits and are linked to over 60 disease phenotypes. However, they …
Comprehensive genome analysis and variant detection at scale using DRAGEN
Research and medical genomics require comprehensive, scalable methods for the
discovery of novel disease targets, evolutionary drivers and genetic markers with clinical …
discovery of novel disease targets, evolutionary drivers and genetic markers with clinical …
Implementing whole genome sequencing (WGS) in clinical practice: advantages, challenges, and future perspectives
The integration of whole genome sequencing (WGS) into all aspects of modern medicine
represents the next step in the evolution of healthcare. Using this technology, scientists and …
represents the next step in the evolution of healthcare. Using this technology, scientists and …
The complete and fully-phased diploid genome of a male Han Chinese
Since the release of the complete human genome, the priority of human genomic study has
now been shifting towards closing gaps in ethnic diversity. Here, we present a fully phased …
now been shifting towards closing gaps in ethnic diversity. Here, we present a fully phased …
Plant pangenomes for crop improvement, biodiversity and evolution
Plant genome sequences catalogue genes and the genetic elements that regulate their
expression. Such inventories further research aims as diverse as map** the molecular …
expression. Such inventories further research aims as diverse as map** the molecular …
Beyond the human genome project: the age of complete human genome sequences and pangenome references
The Human Genome Project was an enormous accomplishment, providing a foundation for
countless explorations into the genetics and genomics of the human species. Yet for many …
countless explorations into the genetics and genomics of the human species. Yet for many …
Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data
Variant calling is fundamental in bacterial genomics, underpinning the identification of
disease transmission clusters, the construction of phylogenetic trees, and antimicrobial …
disease transmission clusters, the construction of phylogenetic trees, and antimicrobial …
Multiple human population movements and cultural dispersal events shaped the landscape of Chinese paternal heritage
M Wang, Y Huang, K Liu, Z Wang… - Molecular Biology …, 2024 - academic.oup.com
Large-scale genomic projects and ancient DNA innovations have ushered in a new
paradigm for exploring human evolutionary history. However, the genetic legacy of …
paradigm for exploring human evolutionary history. However, the genetic legacy of …