[PDF][PDF] Abundance estimation with DNA metabarcoding–recent advancements for terrestrial arthropods

W Sickel, V Zizka, A Scherges, SJ Bourlat… - ARPHA …, 2023 - preprints.arphahub.com
Biodiversity is declining at alarming rates worldwide and large-scale monitoring is urgently
needed to understand changes and their drivers. While classical taxonomic identification of …

[HTML][HTML] A global perspective on the application of riverine macroinvertebrates as biological indicators in Africa, South-Central America, Mexico and Southern Asia

TE Eriksen, JE Brittain, G Søli, D Jacobsen… - Ecological …, 2021 - Elsevier
The aim of this study is to generate a first global overview of pressures and methods used to
assess the environmental quality of rivers and streams using macroinvertebrates. In total …

[HTML][HTML] Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for …

B Bailet, L Apothéloz-Perret-Gentil, A Baričević… - Science of the Total …, 2020 - Elsevier
Ecological assessment of lakes and rivers using benthic diatom assemblages currently
requires considerable taxonomic expertise to identify species using light microscopy. This …

Decision‐making and best practices for taxonomy‐free environmental DNA metabarcoding in biomonitoring using Hill numbers

E Mächler, JC Walser, F Altermatt - Molecular Ecology, 2021 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding is raising expectations for biomonitoring of
organisms that have hitherto been neglected. To bypass current limitations in taxonomic …

TaxonTableTools: A comprehensive, platform‐independent graphical user interface software to explore and visualise DNA metabarcoding data

TH Macher, AJ Beermann… - Molecular Ecology …, 2021 - Wiley Online Library
DNA metabarcoding is increasingly used as a tool to assess biodiversity in research and
environmental management. Powerful analysis software exists to process raw data …

Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: Testing different combinations of markers …

A Meyer, F Boyer, A Valentini, A Bonin… - Molecular …, 2021 - Wiley Online Library
Macroinvertebrate assemblages are the most common bioindicators used for stream
biomonitoring, yet the standard approach exhibits several time‐consuming steps, including …

Seasonal turnover in community composition of stream‐associated macroinvertebrates inferred from freshwater environmental DNA metabarcoding

M Reinholdt Jensen, E Egelyng Sigsgaard… - Environmental …, 2021 - Wiley Online Library
Macroinvertebrate communities are crucial for biodiversity monitoring and assessment of
ecological status in stream ecosystems. However, traditional monitoring approaches require …

[PDF][PDF] Evaluation of non-destructive DNA extraction protocols for insect metabarcoding: gentler and shorter is better

D Marquina, T Roslin, P Łukasik… - Metabarcoding and …, 2022 - mbmg.pensoft.net
DNA metabarcoding can accelerate research on insect diversity, as it is cheap and fast
compared to manual sorting and identification. Most metabarcoding protocols require …

Translational molecular ecology in practice: linking DNA-based methods to actionable marine environmental management

E Aylagas, A Borja, X Pochon, A Zaiko, N Keeley… - Science of the Total …, 2020 - Elsevier
Molecular-based approaches can provide timely biodiversity assessments, showing an
immense potential to facilitate decision-making in marine environmental management …

DNA metabarcoding of stream invertebrates reveals spatio-temporal variation but consistent status class assessments in a natural and urban river

VMA Zizka, MF Geiger, F Leese - Ecological Indicators, 2020 - Elsevier
DNA metabarcoding of macroinvertebrates is increasingly used for aquatic bioassessment
and-monitoring. A major strength of metabarcoding is the high taxonomic resolution …