[HTML][HTML] Epitranscriptome: review of top 25 most-studied RNA modifications

VA Arzumanian, GV Dolgalev, IY Kurbatov… - International Journal of …, 2022 - mdpi.com
The alphabet of building blocks for RNA molecules is much larger than the standard four
nucleotides. The diversity is achieved by the post-transcriptional biochemical modification of …

[HTML][HTML] Interplay between A-to-I editing and splicing of RNA: a potential point of application for cancer therapy

AO Goncharov, VO Shender, KG Kuznetsova… - International Journal of …, 2022 - mdpi.com
Adenosine-to-inosine RNA editing is a system of post-transcriptional modification widely
distributed in metazoans which is catalyzed by ADAR enzymes and occurs mostly in double …

Massive proteogenomic reanalysis of publicly available proteomic datasets of human tissues in search for protein recoding via adenosine-to-inosine RNA editing

LI Levitsky, MV Ivanov, AO Goncharov… - Journal of Proteome …, 2023 - ACS Publications
The proteogenomic search pipeline developed in this work has been applied for reanalysis
of 40 publicly available shotgun proteomic datasets from various human tissues comprising …

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues

S Wang, D García-Seisdedos, A Prakash… - PLoS computational …, 2022 - journals.plos.org
The increasingly large amount of proteomics data in the public domain enables, among
other applications, the combined analyses of datasets to create comparative protein …

Cytoplasmic FMR1 interacting protein (CYFIP) family members and their function in neural development and disorders

ÍV Biembengut, ILZ Silva, TACB Souza… - Molecular Biology …, 2021 - Springer
In humans, the cytoplasmic FMR1 interacting protein (CYFIP) family is composed of CYFIP1
and CYFIP2. Despite their high similarity and shared interaction with many partners, CYFIP1 …

Intestinal flora induces depression by mediating the dysregulation of cerebral cortex gene expression and regulating the metabolism of stroke patients

X Li, G Han, J Zhao, X Huang, Y Feng… - Frontiers in Molecular …, 2022 - frontiersin.org
Post-stroke depression (PSD) is a common cerebrovascular complication characterized by
complex pathogenesis and poor treatment effects. Here, we tested the influence of …

Dynamics of diversified A-to-I editing in Streptococcus pyogenes is governed by changes in mRNA stability

TF Wulff, K Hahnke, AL Lécrivain… - Nucleic Acids …, 2024 - academic.oup.com
Abstract Adenosine-to-inosine (A-to-I) RNA editing plays an important role in the post-
transcriptional regulation of eukaryotic cell physiology. However, our understanding of the …

[HTML][HTML] Genome-wide identification of RNA editing sites affecting intramuscular fat in pigs

L Wang, J Li, X Hou, H Yan, L Zhang, X Liu, H Gao… - Animals, 2020 - mdpi.com
Simple Summary In order to investigate RNA editing sites affecting IMF (which is associated
with pork quality and human insulin resistance.), we analyzed the transcriptome and …

Validating amino acid variants in proteogenomics using sequence coverage by multiple reads

LI Levitsky, KG Kuznetsova… - Journal of Proteome …, 2022 - ACS Publications
Mass spectrometry-based proteome analysis implies matching the mass spectra of
proteolytic peptides to amino acid sequences predicted from genomic sequences. Reliability …

Proteome-wide analysis of ADAR-mediated messenger RNA editing during fruit fly ontogeny

AA Kliuchnikova, AO Goncharov… - Journal of Proteome …, 2020 - ACS Publications
Adenosine-to-inosine RNA editing is an enzymatic post-transcriptional modification which
modulates immunity and neural transmission in multicellular organisms. In particular, it …