Single-cell trajectory analysis reveals a CD9 positive state to contribute to exit from stem cell-like and embryonic diapause states and transit to drug-resistant states

X Li, A Poire, KJ Jeong, D Zhang, G Chen, C Sun… - Cell Death …, 2023 - nature.com
Bromo-and extra-terminal domain (BET) inhibitors (BETi) have been shown to decrease
tumor growth in preclinical models and clinical trials. However, toxicity and rapid emergence …

Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance

H Fan, F Wang, A Zeng, A Murison, K Tomczak… - Communications …, 2023 - nature.com
Acute myeloid leukemia (AML) is a heterogeneous disease characterized by high rate of
therapy resistance. Since the cell of origin can impact response to therapy, it is crucial to …

A unified model-based framework for doublet or multiplet detection in single-cell multiomics data

H Hu, X Wang, S Feng, Z Xu, J Liu… - Nature …, 2024 - nature.com
Droplet-based single-cell sequencing techniques rely on the fundamental assumption that
each droplet encapsulates a single cell, enabling individual cell omics profiling. However …

Single-cell epigenome analysis identifies molecular events controlling direct conversion of human fibroblasts to pancreatic ductal-like cells

L Fei, K Zhang, N Poddar, S Hautaniemi, B Sahu - Developmental Cell, 2023 - cell.com
Cell fate can be reprogrammed by ectopic expression of lineage-specific transcription
factors (TFs). However, the exact cell state transitions during transdifferentiation are still …

Approaches of single-cell analysis in crop improvement

U Srivastava, S Singh - Genomics of Cereal Crops, 2022 - Springer
Single-cell multiomics approaches have the potential to maximize the scientific impact on
crop improvement. These technologies have become increasingly possible to perform …

Multimodal analysis reveals genes driving neuronal maturation in the primate prefrontal cortex

Y Gao, Q Dong, KH Arachchilage, RD Risgaard… - bioRxiv, 2023 - biorxiv.org
The dorsolateral prefrontal cortex (dlPFC) is an evolutionarily derived cortical region in
primates critical for high-level cognitive functions and implicated in various neuropsychiatric …

[HTML][HTML] Protocol to identify defined reprogramming factor expression using a factor-indexing single-nuclei multiome sequencing approach

L Fei, K Zhang, S Hautaniemi, B Sahu - STAR protocols, 2024 - Elsevier
Ectopic expression of lineage-specific transcription factors (TFs) of another cell type can
induce cell fate reprogramming. However, the heterogeneity of reprogramming cells has …

Multiomics map** and characterization of cellular senescence in aging human skeletal muscle uncovers a novel senotherapeutic for sarcopenia

Y Li, C Li, Q Zhou, X Liu, Y Qiao, T ** and characterization of cellular senescence in aging human muscle uncovers novel senotherapeutics for sarcopenia
Y Li, C Li, Q Zhou, X Liu, Y Qiao, T **e, H Sun… - bioRxiv, 2024 - biorxiv.org
Cellular senescence is recognized as a hallmark of organismal aging but how it drives aging
particularly in human tissues is not fully understood, partly due to the complex …