The next generation fecal microbiota transplantation: to transplant bacteria or virome

Y Yu, W Wang, F Zhang - Advanced Science, 2023 - Wiley Online Library
Fecal microbiota transplantation (FMT) has emerged as a promising therapeutic approach
for dysbiosis‐related diseases. However, the clinical practice of crude fecal transplants …

Multi-omics approaches to studying gastrointestinal microbiome in the context of precision medicine and machine learning

J Wu, SS Singleton, U Bhuiyan, L Krammer… - Frontiers in molecular …, 2024 - frontiersin.org
The human gastrointestinal (gut) microbiome plays a critical role in maintaining host health
and has been increasingly recognized as an important factor in precision medicine. High …

Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes

L Liu, Y Yang, Y Deng, T Zhang - Microbiome, 2022 - Springer
Background The accurate and comprehensive analyses of genome-resolved metagenomics
largely depend on the reconstruction of reference-quality (complete and high-quality) …

The skin microbiome: current techniques, challenges, and future directions

TM Santiago-Rodriguez, B Le François, JM Macklaim… - Microorganisms, 2023 - mdpi.com
Skin acts as a barrier that promotes the colonization of bacteria, fungi, archaea, and viruses
whose membership and function may differ depending on the various specialized niches or …

HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota

CY Kim, J Ma, I Lee - Nature communications, 2022 - nature.com
Advances in metagenomic assembly have led to the discovery of genomes belonging to
uncultured microorganisms. Metagenome-assembled genomes (MAGs) often suffer from …

Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

ZF Zhang, LR Liu, YP Pan, J Pan, M Li - Microbiome, 2023 - Springer
Background Mangrove wetlands are coastal ecosystems with important ecological features
and provide habitats for diverse microorganisms with key roles in nutrient and …

[HTML][HTML] Prevention and treatment of antibiotics-associated adverse effects through the use of probiotics: A review

S Yang, J Qiao, M Zhang, LY Kwok, BB Matijašić… - Journal of Advanced …, 2024 - Elsevier
Background The human gut hosts a diverse microbial community, essential for maintaining
overall health. However, antibiotics, commonly prescribed for infections, can disrupt this …

Current progresses and challenges for microbiome research in human health: a perspective

S Filardo, M Di Pietro, R Sessa - Frontiers in Cellular and Infection …, 2024 - frontiersin.org
It is becoming increasingly clear that the human microbiota, also known as “the hidden
organ”, possesses a pivotal role in numerous processes involved in maintaining the …

Integrative metagenomic, transcriptomic, and proteomic analysis reveal the microbiota-host interplay in early-stage lung adenocarcinoma among non-smokers

Y Sun, Z Gan, X Wang, J Liu, W Zhong, Z Zhang… - Journal of Translational …, 2024 - Springer
Background The incidence of early-stage lung adenocarcinoma (ES-LUAD) is steadily
increasing among non-smokers. Previous research has identified dysbiosis in the gut …

The intestinal microbiome associated with lipid metabolism and obesity in humans and animals

Z Jian, L Zeng, T Xu, S Sun, S Yan… - Journal of applied …, 2022 - academic.oup.com
Intestinal microbiota is considered to play an integral role in maintaining health of host by
modulating several physiological functions including nutrition, metabolism and immunity …