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Understanding and modeling polymers: The challenge of multiple scales
F Schmid - ACS Polymers Au, 2022 - ACS Publications
Polymer materials are multiscale systems by definition. Already the description of a single
macromolecule involves a multitude of scales, and cooperative processes in polymer …
macromolecule involves a multitude of scales, and cooperative processes in polymer …
Learning force field parameters from differentiable particle-field molecular dynamics
We develop∂-HylleraasMD (∂-HyMD), a fully end-to-end differentiable molecular dynamics
software based on the Hamiltonian hybrid particle-field formalism, and use it to establish a …
software based on the Hamiltonian hybrid particle-field formalism, and use it to establish a …
A Coarse-Grained SPICA Makeover for Solvated and Bare Sodium and Chloride Ions
Aqueous ionic solutions are pivotal in various scientific domains due to their natural
prevalence and vital roles in biological and chemical processes. Molecular dynamics has …
prevalence and vital roles in biological and chemical processes. Molecular dynamics has …
Soft matter under pressure: Pushing particle–field molecular dynamics to the isobaric ensemble
Hamiltonian hybrid particle–field molecular dynamics is a computationally efficient method
to study large soft matter systems. In this work, we extend this approach to constant-pressure …
to study large soft matter systems. In this work, we extend this approach to constant-pressure …
HylleraasMD: A Domain Decomposition-Based Hybrid Particle-Field Software for Multiscale Simulations of Soft Matter
We present HylleraasMD (HyMD), a comprehensive implementation of the recently
proposed Hamiltonian formulation of hybrid particle-field molecular dynamics. The …
proposed Hamiltonian formulation of hybrid particle-field molecular dynamics. The …
Can polarity-inverted surfactants self-assemble in nonpolar solvents?
We investigate the self-assembly process of a surfactant with inverted polarity in water and
cyclohexane using both all-atom and coarse-grained hybrid particle-field molecular …
cyclohexane using both all-atom and coarse-grained hybrid particle-field molecular …
On the equivalence of the hybrid particle–field and Gaussian core models
Hybrid particle–field molecular dynamics is a molecular simulation strategy, wherein
particles couple to a density field instead of through ordinary pair potentials. Traditionally …
particles couple to a density field instead of through ordinary pair potentials. Traditionally …
[PDF][PDF] HylleraasMD: Massively parallel hybrid particle-field molecular dynamics in Python
Molecular dynamics (MD) is a computational methodology in which the dynamical behavior
of systems of interacting atoms and molecules is investigated by integrating the …
of systems of interacting atoms and molecules is investigated by integrating the …
Hamiltonian hybrid particle–field method for biological soft matter-Efficient simulation and machine learning approaches
M Ledum - 2022 - duo.uio.no
Hybrid particle–field methods couple coarse-grained particles through a density field-based
intermolecular potential. This allows for large-scale and computationally efficient simulations …
intermolecular potential. This allows for large-scale and computationally efficient simulations …