The molecular basis of heterochromatin assembly and epigenetic inheritance

SIS Grewal - Molecular cell, 2023 - cell.com
Heterochromatin plays a fundamental role in gene regulation, genome integrity, and
silencing of repetitive DNA elements. Histone modifications are essential for the …

Principles of genome folding into topologically associating domains

Q Szabo, F Bantignies, G Cavalli - Science advances, 2019 - science.org
Understanding the mechanisms that underlie chromosome folding within cell nuclei is
essential to determine the relationship between genome structure and function. The recent …

High-resolution TADs reveal DNA sequences underlying genome organization in flies

F Ramírez, V Bhardwaj, L Arrigoni, KC Lam… - Nature …, 2018 - nature.com
Despite an abundance of new studies about topologically associating domains (TADs), the
role of genetic information in TAD formation is still not fully understood. Here we use our …

Organization and function of the 3D genome

B Bonev, G Cavalli - Nature Reviews Genetics, 2016 - nature.com
Understanding how chromatin is organized within the nucleus and how this 3D architecture
influences gene regulation, cell fate decisions and evolution are major questions in cell …

Ever-changing landscapes: transcriptional enhancers in development and evolution

HK Long, SL Prescott, J Wysocka - Cell, 2016 - cell.com
A class of cis-regulatory elements, called enhancers, play a central role in orchestrating
spatiotemporally precise gene-expression programs during development. Consequently …

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

IM Flyamer, J Gassler, M Imakaev, HB Brandão… - Nature, 2017 - nature.com
Chromatin is reprogrammed after fertilization to produce a totipotent zygote with the potential
to generate a new organism. The maternal genome inherited from the oocyte and the …

[HTML][HTML] Formation of chromosomal domains by loop extrusion

G Fudenberg, M Imakaev, C Lu, A Goloborodko… - Cell reports, 2016 - cell.com
Topologically associating domains (TADs) are fundamental structural and functional
building blocks of human interphase chromosomes, yet the mechanisms of TAD formation …

[HTML][HTML] Extensive heterogeneity and intrinsic variation in spatial genome organization

EH Finn, G Pegoraro, HB Brandão, AL Valton… - Cell, 2019 - cell.com
Several general principles of global 3D genome organization have recently been
established, including non-random positioning of chromosomes and genes in the cell …

CTCF and cohesin in genome folding and transcriptional gene regulation

M Merkenschlager, EP Nora - Annual review of genomics and …, 2016 - annualreviews.org
Genome function, replication, integrity, and propagation rely on the dynamic structural
organization of chromosomes during the cell cycle. Genome folding in interphase provides …

A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture

J Gassler, HB Brandão, M Imakaev, IM Flyamer… - The EMBO …, 2017 - embopress.org
Fertilization triggers assembly of higher‐order chromatin structure from a condensed
maternal and a naïve paternal genome to generate a totipotent embryo. Chromatin loops …