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Ligand-binding affinity estimates supported by quantum-mechanical methods
One of the largest challenges of computational chemistry is calculation of accurate free
energies for the binding of a small molecule to a biological macromolecule, which has …
energies for the binding of a small molecule to a biological macromolecule, which has …
Advances in docking
VB Sulimov, DC Kutov… - Current medicinal …, 2019 - ingentaconnect.com
Background: Design of small molecules which are able to bind to the protein responsible for
a disease is the key step of the entire process of the new medicine discovery. Atomistic …
a disease is the key step of the entire process of the new medicine discovery. Atomistic …
Quantum mechanical calculation of noncovalent interactions: a large-scale evaluation of PMx, DFT, and SAPT approaches
Quantum mechanical (QM) calculations of noncovalent interactions are uniquely useful as
tools to test and improve molecular mechanics force fields and to model the forces involved …
tools to test and improve molecular mechanics force fields and to model the forces involved …
Enhancing the hydrolytic activity of a lipase towards larger triglycerides through lid domain engineering
Lipases have valuable potential for industrial use, particularly those mostly active against
water-insoluble substrates, such as triglycerides composed of long-carbon chain fatty acids …
water-insoluble substrates, such as triglycerides composed of long-carbon chain fatty acids …
Fragment-based quantum mechanical approach to biomolecules, molecular clusters, molecular crystals and liquids
To study large molecular systems beyond the system size that the current state-of-the-art ab
initio electronic structure methods could handle, fragment-based quantum mechanical (QM) …
initio electronic structure methods could handle, fragment-based quantum mechanical (QM) …
Quantum mechanics implementation in drug-design workflows: does it really help?
The pharmaceutical industry is progressively operating in an era where development costs
are constantly under pressure, higher percentages of drugs are demanded, and the drug …
are constantly under pressure, higher percentages of drugs are demanded, and the drug …
Towards the quantum-enabled technologies for development of drugs or delivery systems
P Hassanzadeh - Journal of Controlled Release, 2020 - Elsevier
Enormous advances in technology and science have provided outstanding innovations
including the development of quantum computers (QCs) capable of performing various tasks …
including the development of quantum computers (QCs) capable of performing various tasks …
Novel type of virtual ligand screening on the basis of quantum-chemical calculations for protein–ligand complexes and extended clustering techniques
R Kurauchi, C Watanabe, K Fukuzawa… - … and Theoretical Chemistry, 2015 - Elsevier
We propose a novel method for virtual ligand screening to explore drug candidates binding
to target proteins. Employing both information on the ligand-residue interactions calculated …
to target proteins. Employing both information on the ligand-residue interactions calculated …
Applications of the fragment molecular orbital method to drug research
MP Mazanetz, E Chudyk, DG Fedorov… - Computer-Aided Drug …, 2016 - Springer
The study of molecular behavior at high levels of theoretical accuracy has entered into a
new age in computational drug discovery where quantum mechanical (QM) methods are …
new age in computational drug discovery where quantum mechanical (QM) methods are …
Improving protein-ligand docking results using the Semiempirical quantum mechanics: testing on the PDBbind 2016 core set
Z Mohebbinia, R Firouzi… - Journal of Biomolecular …, 2023 - Taylor & Francis
Molecular docking techniques are routinely employed for predicting ligand binding
conformations and affinities in the in silico phase of the drug design and development …
conformations and affinities in the in silico phase of the drug design and development …