Adaptive immune receptor repertoire analysis

V Mhanna, H Bashour, K Lê Quý, P Barennes… - Nature Reviews …, 2024 - nature.com
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …

Reverse vaccinology 2.0: Human immunology instructs vaccine antigen design

R Rappuoli, MJ Bottomley, U D'Oro, O Finco… - Journal of Experimental …, 2016 - rupress.org
Traditionally, vaccines have been developed by cultivating infectious agents and isolating
the inactivated whole pathogen or some of its purified components. 20 years ago, reverse …

Modeling human adaptive immune responses with tonsil organoids

LE Wagar, A Salahudeen, CM Constantz, BS Wendel… - Nature medicine, 2021 - nature.com
Most of what we know about adaptive immunity has come from inbred mouse studies, using
methods that are often difficult or impossible to confirm in humans. In addition, vaccine …

Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2

SCA Nielsen, F Yang, KJL Jackson, RA Hoh… - Cell host & …, 2020 - cell.com
B cells are critical for the production of antibodies and protective immunity to viruses. Here
we show that patients infected with severe acute respiratory syndrome coronavirus 2 (SARS …

Diversity, cellular origin and autoreactivity of antibody-secreting cell population expansions in acute systemic lupus erythematosus

CM Tipton, CF Fucile, J Darce, A Chida, T Ichikawa… - Nature …, 2015 - nature.com
Acute systemic lupus erythematosus (SLE) courses with surges of antibody-secreting cells
(ASCs) whose origin, diversity and contribution to serum autoantibodies remain unknown …

Potent and protective IGHV3-53/3-66 public antibodies and their shared escape mutant on the spike of SARS-CoV-2

Q Zhang, B Ju, J Ge, JFW Chan, L Cheng… - Nature …, 2021 - nature.com
Neutralizing antibodies (nAbs) to SARS-CoV-2 hold powerful potentials for clinical
interventions against COVID-19 disease. However, their common genetic and biologic …

Observed antibody space: a resource for data mining next-generation sequencing of antibody repertoires

A Kovaltsuk, J Leem, S Kelm, J Snowden… - The Journal of …, 2018 - journals.aai.org
Abs are immune system proteins that recognize noxious molecules for elimination. Their
sequence diversity and binding versatility have made Abs the primary class of …

[HTML][HTML] A large-scale systematic survey reveals recurring molecular features of public antibody responses to SARS-CoV-2

Y Wang, M Yuan, H Lv, J Peng, IA Wilson, NC Wu - Immunity, 2022 - cell.com
Global research to combat the COVID-19 pandemic has led to the isolation and
characterization of thousands of human antibodies to the SARS-CoV-2 spike protein …

Systems immunology: just getting started

MM Davis, CM Tato, D Furman - Nature immunology, 2017 - nature.com
Abstract Systems-biology approaches in immunology take various forms, but here we review
strategies for measuring a broad swath of immunological functions as a means of …

In-depth determination and analysis of the human paired heavy-and light-chain antibody repertoire

BJ DeKosky, T Kojima, A Rodin, W Charab… - Nature medicine, 2015 - nature.com
High-throughput immune repertoire sequencing has emerged as a critical step in the
understanding of adaptive responses following infection or vaccination or in autoimmunity …