Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
Tiled amplicon sequencing has served as an essential tool for tracking the spread and
evolution of pathogens. Over 15 million complete SARS-CoV-2 genomes are now publicly …
evolution of pathogens. Over 15 million complete SARS-CoV-2 genomes are now publicly …
Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes
Background Metagenomic profiling algorithms commonly rely on genomic differences
between lineages, strains, or species to infer the relative abundances of sequences present …
between lineages, strains, or species to infer the relative abundances of sequences present …