Regulatory R-loops as facilitators of gene expression and genome stability

C Niehrs, B Luke - Nature reviews Molecular cell biology, 2020 - nature.com
R-loops are three-stranded structures that harbour an RNA–DNA hybrid and frequently form
during transcription. R-loop misregulation is associated with DNA damage, transcription …

Lysine acetylation goes global: from epigenetics to metabolism and therapeutics

I Ali, RJ Conrad, E Verdin, M Ott - Chemical reviews, 2018 - ACS Publications
Post-translational acetylation of lysine residues has emerged as a key regulatory
mechanism in all eukaryotic organisms. Originally discovered in 1963 as a unique …

Bromodomain biology and drug discovery

N Zaware, MM Zhou - Nature structural & molecular biology, 2019 - nature.com
The bromodomain (BrD) is a conserved structural module found in chromatin-and
transcription-associated proteins that acts as the primary reader for acetylated lysine …

Histone demethylase KDM5A regulates the ZMYND8–NuRD chromatin remodeler to promote DNA repair

F Gong, T Clouaire, M Aguirrebengoa, G Legube… - Journal of Cell …, 2017 - rupress.org
Upon DNA damage, histone modifications are dynamically reshaped to accommodate DNA
damage signaling and repair within chromatin. In this study, we report the identification of …

ZMYND8 acetylation mediates HIF-dependent breast cancer progression and metastasis

Y Chen, B Zhang, L Bao, L **, M Yang… - The Journal of …, 2018 - Am Soc Clin Investig
Altered epigenetic reprogramming contributes to breast cancer progression and metastasis.
How the epigenetic reader mediates breast cancer progression remains poorly understood …

A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer

CE Antal, TG Oh, S Aigner, EC Luo, BA Yee… - Nature …, 2023 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) is a lethal malignancy in need of new
therapeutic options. Using unbiased analyses of super-enhancers (SEs) as sentinels of core …

The chromatin response to double-strand DNA breaks and their repair

R Aleksandrov, R Hristova, S Stoynov, A Gospodinov - Cells, 2020 - mdpi.com
Cellular DNA is constantly being damaged by numerous internal and external mutagenic
factors. Probably the most severe type of insults DNA could suffer are the double-strand …

Bromodomain and extraterminal (BET) proteins: biological functions, diseases, and targeted therapy

ZQ Wang, ZC Zhang, YY Wu, YN Pi, SH Lou… - Signal transduction and …, 2023 - nature.com
BET proteins, which influence gene expression and contribute to the development of cancer,
are epigenetic interpreters. Thus, BET inhibitors represent a novel form of epigenetic …

[HTML][HTML] ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency

Z Cao, KA Budinich, H Huang, D Ren, B Lu, Z Zhang… - Molecular cell, 2021 - cell.com
The transformed state in acute leukemia requires gene regulatory programs involving
transcription factors and chromatin modulators. Here, we uncover an IRF8-MEF2D …

Acetylation reprograms MITF target selectivity and residence time

P Louphrasitthiphol, A Loffreda, V Pogenberg… - Nature …, 2023 - nature.com
The ability of transcription factors to discriminate between different classes of binding sites
associated with specific biological functions underpins effective gene regulation in …