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Cancer transcriptome profiling at the juncture of clinical translation
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …
Computational methods for transcriptome annotation and quantification using RNA-seq
High-throughput RNA sequencing (RNA-seq) promises a comprehensive picture of the
transcriptome, allowing for the complete annotation and quantification of all genes and their …
transcriptome, allowing for the complete annotation and quantification of all genes and their …
Alternative splicing: increasing diversity in the proteomic world
BR Graveley - TRENDS in Genetics, 2001 - cell.com
How can the genome of Drosophila melanogaster contain fewer genes than the
undoubtedly simpler organism Caenorhabditis elegans? The answer must lie within their …
undoubtedly simpler organism Caenorhabditis elegans? The answer must lie within their …
Variation is the spice of life
Assembling a comprehensive catalog of common human sequence polymorphisms is a key
goal of the Human Genome Project. The International SNP Map Working Group has …
goal of the Human Genome Project. The International SNP Map Working Group has …
[CARTE][B] RNA, the epicenter of genetic information
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
Using the transcriptome to annotate the genome
S Saha, AB Sparks, C Rago, V Akmaev, CJ Wang… - Nature …, 2002 - nature.com
A remaining challenge for the human genome project involves the identification and
annotation of expressed genes. The public and private sequencing efforts have identified∼ …
annotation of expressed genes. The public and private sequencing efforts have identified∼ …
Experimental annotation of the human genome using microarray technology
The most important product of the sequencing of a genome is a complete, accurate
catalogue of genes and their products, primarily messenger RNA transcripts and their …
catalogue of genes and their products, primarily messenger RNA transcripts and their …
[HTML][HTML] Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
A crucial aim upon the completion of the human genome is the verification and functional
annotation of all predicted genes and their protein products. Here we describe the map** …
annotation of all predicted genes and their protein products. Here we describe the map** …
The transcriptional activity of human Chromosome 22
A DNA microarray representing nearly all of the unique sequences of human Chromosome
22 was constructed and used to measure global-transcriptional activity in placental poly (A)+ …
22 was constructed and used to measure global-transcriptional activity in placental poly (A)+ …
The use of MPSS for whole-genome transcriptional analysis in Arabidopsis
BC Meyers, SS Tej, TH Vu, CD Haudenschild… - Genome …, 2004 - genome.cshlp.org
We have generated 36,991,173 17-base sequence “signatures” representing transcripts
from the model plant Arabidopsis. These data were derived by massively parallel signature …
from the model plant Arabidopsis. These data were derived by massively parallel signature …