Deciphering cell–cell interactions and communication from gene expression

E Armingol, A Officer, O Harismendy… - Nature Reviews …, 2021 - nature.com
Cell–cell interactions orchestrate organismal development, homeostasis and single-cell
functions. When cells do not properly interact or improperly decode molecular messages …

Computational systems biology

H Kitano - Nature, 2002 - nature.com
To understand complex biological systems requires the integration of experimental and
computational research—in other words a systems biology approach. Computational …

WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans

P Davis, M Zarowiecki, V Arnaboldi, A Becerra… - Genetics, 2022 - academic.oup.com
Abstract WormBase (www. wormbase. org) is the central repository for the genetics and
genomics of the nematode Caenorhabditis elegans. We provide the research community …

[BOOK][B] Behavioral genetics

R Plomin - 2008 - books.google.com
Behavioral Genetics, Fifth Edition provides an engaging and clear overview of human and
animal behavioral genetics that is designed to introduce students in the behavioral …

A practical guide to linking brain-wide gene expression and neuroimaging data

A Arnatkevic̆iūtė, BD Fulcher, A Fornito - Neuroimage, 2019 - Elsevier
The recent availability of comprehensive, brain-wide gene expression atlases such as the
Allen Human Brain Atlas (AHBA) has opened new opportunities for understanding how …

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng… - Science, 2010 - science.org
We systematically generated large-scale data sets to improve genome annotation for the
nematode Caenorhabditis elegans, a key model organism. These data sets include …

Paleoproteomics

C Warinner, K Korzow Richter, MJ Collins - Chemical reviews, 2022 - ACS Publications
Paleoproteomics, the study of ancient proteins, is a rapidly growing field at the intersection of
molecular biology, paleontology, archaeology, paleoecology, and history. Paleoproteomics …

A chaperome subnetwork safeguards proteostasis in aging and neurodegenerative disease

M Brehme, C Voisine, T Rolland, S Wachi, JH Soper… - Cell reports, 2014 - cell.com
Chaperones are central to the proteostasis network (PN) and safeguard the proteome from
misfolding, aggregation, and proteotoxicity. We categorized the human chaperome of 332 …

The BioGRID interaction database: 2011 update

C Stark, BJ Breitkreutz, A Chatr-Aryamontri… - Nucleic acids …, 2010 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID) is a public
database that archives and disseminates genetic and protein interaction data from model …

[HTML][HTML] COMPARTMENTS: unification and visualization of protein subcellular localization evidence

JX Binder, S Pletscher-Frankild, K Tsafou, C Stolte… - Database, 2014 - academic.oup.com
Information on protein subcellular localization is important to understand the cellular
functions of proteins. Currently, such information is manually curated from the literature …