Recent advances in metagenomic approaches, applications, and challenges

NK Lema, MT Gemeda, AA Woldesemayat - Current Microbiology, 2023 - Springer
Advances in metagenomics analysis with the advent of next-generation sequencing have
extended our knowledge of microbial communities as compared to conventional techniques …

Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity

YF Pan, H Zhao, QY Gou, PB Shi, JH Tian… - Nature Ecology & …, 2024 - nature.com
Mosquito transmitted viruses are responsible for an increasing burden of human disease.
Despite this, little is known about the diversity and ecology of viruses within individual …

CuGenDBv2: an updated database for cucurbit genomics

J Yu, S Wu, H Sun, X Wang, X Tang, S Guo… - Nucleic acids …, 2023 - academic.oup.com
The Cucurbitaceae (cucurbit) family consists of about 1,000 species in 95 genera, including
many economically important and popular fruit and vegetable crops. During the past several …

Knowing and naming: phage annotation and nomenclature for phage therapy

SR Grigson, SK Giles, RA Edwards… - Clinical Infectious …, 2023 - academic.oup.com
Bacteriophages, or phages, are viruses that infect bacteria sha** microbial communities
and ecosystems. They have gained attention as potential agents against antibiotic …

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

RA Edwards, AA Vega, HM Norman, M Ohaeri… - Nature …, 2019 - nature.com
Microbiomes are vast communities of microorganisms and viruses that populate all natural
ecosystems. Viruses have been considered to be the most variable component of …

COI1 F-box proteins regulate DELLA protein levels, growth, and photosynthetic efficiency in maize

L Feiz, C Shyu, S Wu, KR Ahern, I Gull, Y Rong… - The Plant …, 2024 - academic.oup.com
The F-box protein Coronatine Insensitive (COI) is a receptor for the jasmonic acid signaling
pathway in plants. To investigate the functions of the 6 maize (Zea mays) COI proteins …

Impaired TIGIT expression on B cells drives circulating follicular helper T cell expansion in multiple sclerosis

H Asashima, PP Axisa, THG Pham, EE Longbrake… - The Journal of clinical …, 2022 - jci.org
B cell depletion in patients with relapsing-remitting multiple sclerosis (RRMS) markedly
prevents new MRI-detected lesions and disease activity, suggesting the hypothesis that …

Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host

V Lloréns-Rico, AC Gregory, J Van Weyenbergh… - Nature …, 2021 - nature.com
Understanding the pathology of COVID-19 is a global research priority. Early evidence
suggests that the respiratory microbiome may be playing a role in disease progression, yet …

[HTML][HTML] Gut microbiome strain-sharing within isolated village social networks

F Beghini, J Pullman, M Alexander, SV Shridhar… - Nature, 2024 - nature.com
When humans assemble into face-to-face social networks, they create an extended social
environment that permits exposure to the microbiome of others, thereby sha** the …

[HTML][HTML] PD-1highCXCR5–CD4+ peripheral helper T cells promote CXCR3+ plasmablasts in human acute viral infection

H Asashima, S Mohanty, M Comi, WE Ruff, KB Hoehn… - Cell Reports, 2023 - cell.com
T cell-B cell interaction is the key immune response to protect the host from severe viral
infection. However, how T cells support B cells to exert protective humoral immunity in …