Molecular profiling for precision cancer therapies

ER Malone, M Oliva, PJB Sabatini, TL Stockley… - Genome medicine, 2020 - Springer
The number of druggable tumor-specific molecular aberrations has grown substantially in
the past decade, with a significant survival benefit obtained from biomarker matching …

A critical spotlight on the paradigms of FFPE-DNA sequencing

TA Steiert, G Parra, M Gut, N Arnold… - Nucleic Acids …, 2023 - academic.oup.com
In the late 19th century, formalin fixation with paraffin-embedding (FFPE) of tissues was
developed as a fixation and conservation method and is still used to this day in routine …

Genoty**‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genoty** method based on custom amplicon sequencing

NR Campbell, SA Harmon… - Molecular ecology …, 2015 - Wiley Online Library
Genoty**‐in‐Thousands by sequencing (GT‐seq) is a method that uses next‐generation
sequencing of multiplexed PCR products to generate genotypes from relatively small panels …

Current practices and guidelines for clinical next-generation sequencing oncology testing

SP Strom - Cancer biology & medicine, 2016 - cancerbiomed.org
Next-generation sequencing (NGS) has been rapidly integrated into molecular pathology,
dramatically increasing the breadth genomic of information available to oncologists and their …

DNA degrades during storage in formalin-fixed and paraffin-embedded tissue blocks

A Guyard, A Boyez, A Pujals, C Robe… - Virchows Archiv, 2017 - Springer
Formalin-fixed paraffin-embedded (FFPE) tissue blocks are widely used to identify clinically
actionable molecular alterations or perform retrospective molecular studies. Our goal was to …

[HTML][HTML] Clinical validation of a next-generation sequencing genomic oncology panel via cross-platform benchmarking against established amplicon sequencing …

S Kadri, BC Long, I Mujacic, CJ Zhen, MN Wurst… - The Journal of Molecular …, 2017 - Elsevier
Next-generation sequencing (NGS) genomic oncology profiling assays have emerged as
key drivers of personalized cancer care and translational research. However, validation of …

Targeted next generation sequencing as a reliable diagnostic assay for the detection of somatic mutations in tumours using minimal DNA amounts from formalin fixed …

WWJ de Leng, CG Gadellaa-van Hooijdonk… - PloS one, 2016 - journals.plos.org
Background Targeted Next Generation Sequencing (NGS) offers a way to implement testing
of multiple genetic aberrations in diagnostic pathology practice, which is necessary for …

A novel three-round multiplex PCR for SNP genoty** with next generation sequencing

K Chen, Y Zhou, K Li, L Qi, Q Zhang, M Wang… - Analytical and …, 2016 - Springer
Owing to the high throughput and low cost, next generation sequencing has attracted much
attention for SNP genoty** application for researchers. Here, we introduce a new method …

Non-classic EGFR mutations in a cohort of Dutch EGFR-mutated NSCLC patients and outcomes following EGFR-TKI treatment

JL Kuiper, SMS Hashemi, E Thunnissen… - British Journal of …, 2016 - nature.com
Background: Data on non-small-cell lung cancer (NSCLC) patients with non-classic
epidermal growth factor receptor (EGFR) mutations are scarce, especially in non-Asian …

[HTML][HTML] HPV E4 expression and DNA hypermethylation of CADM1, MAL, and miR124-2 genes in cervical cancer and precursor lesions

M van Zummeren, WW Kremer, A Leeman… - Modern Pathology, 2018 - Elsevier
In this study, we evaluate the expression of human papillomavirus E4 protein (marker for the
onset of a productive infection) and hypermethylation of host-cell CADM1, MAL, and miR124 …