Network propagation: a universal amplifier of genetic associations
Biological networks are powerful resources for the discovery of genes and genetic modules
that drive disease. Fundamental to network analysis is the concept that genes underlying the …
that drive disease. Fundamental to network analysis is the concept that genes underlying the …
Recent advances in network-based methods for disease gene prediction
Disease–gene association through genome-wide association study (GWAS) is an arduous
task for researchers. Investigating single nucleotide polymorphisms that correlate with …
task for researchers. Investigating single nucleotide polymorphisms that correlate with …
deepDR: a network-based deep learning approach to in silico drug repositioning
Motivation Traditional drug discovery and development are often time-consuming and high
risk. Repurposing/repositioning of approved drugs offers a relatively low-cost and high …
risk. Repurposing/repositioning of approved drugs offers a relatively low-cost and high …
Predicting miRNA–disease association based on inductive matrix completion
X Chen, L Wang, J Qu, NN Guan, JQ Li - Bioinformatics, 2018 - academic.oup.com
Motivation It has been shown that microRNAs (miRNAs) play key roles in variety of
biological processes associated with human diseases. In Consideration of the cost and …
biological processes associated with human diseases. In Consideration of the cost and …
A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information
The emergence of large-scale genomic, chemical and pharmacological data provides new
opportunities for drug discovery and repositioning. In this work, we develop a computational …
opportunities for drug discovery and repositioning. In this work, we develop a computational …
Uncovering disease-disease relationships through the incomplete interactome
INTRODUCTION A disease is rarely a straightforward consequence of an abnormality in a
single gene, but rather reflects the interplay of multiple molecular processes. The …
single gene, but rather reflects the interplay of multiple molecular processes. The …
Inductive matrix completion for predicting gene–disease associations
Motivation: Most existing methods for predicting causal disease genes rely on specific type
of evidence, and are therefore limited in terms of applicability. More often than not, the type …
of evidence, and are therefore limited in terms of applicability. More often than not, the type …
GCN-MF: disease-gene association identification by graph convolutional networks and matrix factorization
Discovering disease-gene association is a fundamental and critical biomedical task, which
assists biologists and physicians to discover pathogenic mechanism of syndromes. With …
assists biologists and physicians to discover pathogenic mechanism of syndromes. With …
Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods
Identification of disease-associated circular RNAs (circRNAs) is of critical importance,
especially with the dramatic increase in the amount of circRNAs. However, the availability of …
especially with the dramatic increase in the amount of circRNAs. However, the availability of …
Prediction and validation of disease genes using HeteSim Scores
Deciphering the gene disease association is an important goal in biomedical research. In
this paper, we use a novel relevance measure, called HeteSim, to prioritize candidate …
this paper, we use a novel relevance measure, called HeteSim, to prioritize candidate …