EzBioCloud: a genome-driven database and platform for microbiome identification and discovery

M Chalita, YO Kim, S Park, HS Oh… - … of Systematic and …, 2024 - microbiologyresearch.org
With the continued evolution of DNA sequencing technologies, the role of genome
sequence data has become more integral in the classification and identification of Bacteria …

Guidelines for interpreting the International Code of Nomenclature of Prokaryotes and for preparing a Request for an Opinion

DR Arahal, CT Bull, HJ Busse… - … of systematic and …, 2023 - microbiologyresearch.org
In this paper the Judicial Commission provides general guidance for interpreting the
International Code of Nomenclature of Prokaryotes (ICNP) and specific assistance to …

Guidelines for the description of rhizobial symbiovars

E Martinez-Romero, A Peix… - … of systematic and …, 2024 - microbiologyresearch.org
Rhizobia are bacteria that form nitrogen-fixing nodules in legume plants. The sets of genes
responsible for both nodulation and nitrogen fixation are carried in plasmids or genomic …

Proposed minimal standards for description of new taxa of the class Halobacteria

HL Cui, J Hou, MA Amoozegar… - … of Systematic and …, 2024 - microbiologyresearch.org
Halophilic archaea of the class Halobacteria are the most salt-requiring prokaryotes within
the domain Archaea. In 1997, minimal standards for the description of new taxa in the order …

Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes

M Chuvochina, AJ Mussig, PA Chaumeil… - FEMS Microbiology …, 2023 - academic.oup.com
Abstract The Genome Taxonomy Database (GTDB) is a taxonomic framework that defines
prokaryotic taxa as monophyletic groups in concatenated protein reference trees according …

The best of both worlds: a proposal for further integration of Candidatus names into the International Code of Nomenclature of Prokaryotes

D Arahal, M Bisgaard, H Christensen… - … of Systematic and …, 2024 - microbiologyresearch.org
The naming of prokaryotes is governed by the International Code of Nomenclature of
Prokaryotes (ICNP) and partially by the International Code of Nomenclature for Algae, Fungi …

On validly published names, correct names, and changes in the nomenclature of phyla and genera of prokaryotes: a guide for the perplexed

A Oren - npj Biofilms and Microbiomes, 2024 - nature.com
The nomenclature of prokaryotes is regulated by the rules of the International Code of
Nomenclature of Prokaryotes. In view of inconsistencies in the use of names of many …

Promethearchaeum syntrophicum gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage 'Asgard' archaea, and proposal of the new archaeal …

H Imachi, MK Nobu, S Kato, Y Takaki… - … of Systematic and …, 2024 - microbiologyresearch.org
An anaerobic, mesophilic, syntrophic, archaeon strain MK-D1T, was isolated as a pure co-
culture with Methanogenium sp. strain MK-MG from deep-sea methane seep sediment. This …

A long-awaited taxogenomic investigation of the family Halomonadaceae

RR de la Haba, DR Arahal, C Sánchez-Porro… - Frontiers in …, 2023 - frontiersin.org
The family Halomonadaceae is the largest family composed of halophilic bacteria, with more
than 160 species with validly published names as of July 2023. Several classifications to …

Validation List no. 216. Valid publication of new names and new combinations effectively published outside the IJSEM

A Oren, M Göker - 2024 - microbiologyresearch.org
The purpose of this list is to publish in the International Journal of Systematic and
Evolutionary Microbiology (IJSEM) those new names and new combinations that were …