A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

Utilizing 3D head and neck specimen scanning for intraoperative margin discussions: Proof of concept of our novel approach

MP Saturno, M Brandwein‐Weber, L Greenberg… - Head & …, 2023 - Wiley Online Library
Background The current standard of documenting and communicating frozen section margin
results is inefficient. We present a novel method of generating 3D digital models of gross …

A multimodal computational pipeline for 3D histology of the human brain

M Mancini, A Casamitjana, L Peter, E Robinson… - Scientific reports, 2020 - nature.com
Ex vivo imaging enables analysis of the human brain at a level of detail that is not possible
in vivo with MRI. In particular, histology can be used to study brain tissue at the microscopic …

Map** histological slice sequences to the allen mouse brain atlas without 3D reconstruction

J **ong, J Ren, L Luo, M Horowitz - Frontiers in neuroinformatics, 2018 - frontiersin.org
Histological brain slices are widely used in neuroscience to study the anatomical
organization of neural circuits. Systematic and accurate comparisons of anatomical data …

Breast cancer detection based on simplified deep learning technique with histopathological image using BreaKHis database

TA Toma, S Biswas, MS Miah… - Radio …, 2023 - ieeexplore.ieee.org
Presented here are the results of an investigation conducted to determine the effectiveness
of deep learning (DL)-based systems utilizing the power of transfer learning for detecting …

Three-dimensional imaging and analysis of pathological tissue samples with de novo generation of citrate-based fluorophores

J Pac, DJ Koo, H Cho, D Jung, M Choi, Y Choi… - Science …, 2022 - science.org
Two-dimensional (2D) histopathology based on the observation of thin tissue slides is the
current paradigm in diagnosis and prognosis. However, labeling strategies in conventional …

VERDICT MRI validation in fresh and fixed prostate specimens using patient‐specific moulds for histological and MR alignment

C Bailey, RM Bourne, B Siow, EW Johnston… - NMR in …, 2019 - Wiley Online Library
The VERDICT framework for modelling diffusion MRI data aims to relate parameters from a
biophysical model to histological features used for tumour grading in prostate cancer …

A pilot study comparing three-dimensional models of tumor histopathology and magnetic resonance imaging

A Koivuholma, HJ Sistonen, K Aro, A Mäkitie… - Scientific Reports, 2025 - nature.com
Abstract Three-dimensional (3D) modeling is often used to provide better visual
understanding. This has become an everyday tool especially in medical imaging. However …

Three-dimensional presentation of tumor histopathology: a model using tongue squamous cell carcinoma

A Koivuholma, K Aro, A Mäkitie, M Salmi, T Mirtti… - Diagnostics, 2021 - mdpi.com
Medical imaging often presents objects in three-dimensional (3D) form to provide better
visual understanding. In contrast, histopathology is typically presented as two-dimensional …

Breast cancer research and treatment reconstruction of unilateral breast structure using three-dimensional ultrasound imaging to assess breast neoplasm

Y Lu, J Li, X Zhao, J Li, J Feng, E Fan - Breast cancer research and …, 2019 - Springer
Purpose To develop and evaluate the accuracy of a three-dimensional (3D) US method for
assessing unilateral breast reconstruction and discuss the feasibility of breast ultrasound 3D …