Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Perspective: Advancing the research agenda for improving understanding of cyanobacteria in a future of global change

MA Burford, CC Carey, DP Hamilton, J Huisman… - Harmful Algae, 2020 - Elsevier
Harmful cyanobacterial blooms (= cyanoHABs) are an increasing feature of many
waterbodies throughout the world. Many bloom-forming species produce toxins, making …

Environmental DNA time series in ecology

M Bálint, M Pfenninger, HP Grossart, P Taberlet… - Trends in Ecology & …, 2018 - cell.com
Ecological communities change in time and space, but long-term dynamics at the century-to-
millennia scale are poorly documented due to lack of relevant data sets. Nevertheless …

Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication

ME Monchamp, P Spaak, I Domaizon… - Nature Ecology & …, 2018 - nature.com
Human impacts on biodiversity are well recognized, but uncertainties remain regarding
patterns of diversity change at different spatial and temporal scales. Changes in microbial …

[HTML][HTML] Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes

PW MacKeigan, RE Garner, MÈ Monchamp, DA Walsh… - Harmful Algae, 2022 - Elsevier
Accurately identifying the species present in an ecosystem is vital to lake managers and
successful bioassessment programs. This is particularly important when monitoring …

Dead or alive: sediment DNA archives as tools for tracking aquatic evolution and adaptation

M Ellegaard, MRJ Clokie, T Czypionka… - Communications …, 2020 - nature.com
DNA can be preserved in marine and freshwater sediments both in bulk sediment and in
intact, viable resting stages. Here, we assess the potential for combined use of ancient …

DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity

I Domaizon, A Winegardner, E Capo, J Gauthier… - Journal of …, 2017 - Springer
The emergence of DNA analyses of lake sediments has opened up many new areas of
inquiry, including the study of taxa that were traditionally not considered in paleolimnology …

Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential

E Capo, ME Monchamp, MJL Coolen… - Environmental …, 2022 - Wiley Online Library
In‐depth knowledge about spatial and temporal variation in microbial diversity and function
is needed for a better understanding of ecological and evolutionary responses to global …

Water column dynamics control nitrite-dependent anaerobic methane oxidation by Candidatus “Methylomirabilis” in stratified lake basins

G Su, MF Lehmann, J Tischer, Y Weber… - The ISME …, 2023 - academic.oup.com
We investigated microbial methane oxidation in the water column of two connected but
hydrodynamically contrasting basins of Lake Lugano, Switzerland. Both basins accumulate …

Ancient DNA reveals potentially toxic cyanobacteria increasing with climate change

J Zhang, K Shi, HW Paerl, KM Rühland, Y Yuan… - Water Research, 2023 - Elsevier
Cyanobacterial blooms in freshwater systems are a global threat to human and aquatic
ecosystem health, exhibiting particularly harmful effects when toxin-producing taxa are …