Protein structure prediction: conventional and deep learning perspectives

VA Jisna, PB Jayaraj - The protein journal, 2021 - Springer
Protein structure prediction is a way to bridge the sequence-structure gap, one of the main
challenges in computational biology and chemistry. Predicting any protein's accurate …

[HTML][HTML] Visualizing and trap** transient oligomers in amyloid assembly pathways

EE Cawood, TK Karamanos, AJ Wilson… - Biophysical chemistry, 2021 - Elsevier
Oligomers which form during amyloid fibril assembly are considered to be key contributors
towards amyloid disease. However, understanding how such intermediates form, their …

Structure of the chemokine receptor CXCR1 in phospholipid bilayers

SH Park, BB Das, F Casagrande, Y Tian, HJ Nothnagel… - Nature, 2012 - nature.com
CXCR1 is one of two high-affinity receptors for the CXC chemokine interleukin-8 (IL-8), a
major mediator of immune and inflammatory responses implicated in many disorders …

[HTML][HTML] A novel mode of DNA recognition by a β‐sheet revealed by the solution structure of the GCC‐box binding domain in complex with DNA

MD Allen, K Yamasaki, M Ohme‐Takagi… - The EMBO …, 1998 - embopress.org
The 3D solution structure of the GCC‐box binding domain of a protein from Arabidopsis
thaliana in complex with its target DNA fragment has been determined by heteronuclear …

Elucidation of the primary and three-dimensional structure of the uterotonic polypeptide kalata B1

O Saether, DJ Craik, ID Campbell, K Sletten, J Juul… - Biochemistry, 1995 - ACS Publications
Revised Manuscript Received December 16, 1994® abstract: The amino acid sequence and
structure of a uterotonic polypeptide extracted from the African plant Oldenlandia affinis DC …

Molecular dynamics: new frontier in personalized medicine

P Sneha, CGP Doss - Advances in protein chemistry and structural biology, 2016 - Elsevier
The field of drug discovery has witnessed infinite development over the last decade with the
demand for discovery of novel efficient lead compounds. Although the development of novel …

Deep learning in biomedical data science

P Baldi - Annual review of biomedical data science, 2018 - annualreviews.org
Since the 1980s, deep learning and biomedical data have been coevolving and feeding
each other. The breadth, complexity, and rapidly expanding size of biomedical data have …

[HTML][HTML] Solution structure of BID, an intracellular amplifier of apoptotic signaling

JJ Chou, H Li, GS Salvesen, J Yuan, G Wagner - Cell, 1999 - cell.com
We report the solution structure of BID, an intracellular cross-talk agent that can amplify
FAS/TNF apoptotic signal through the mitochondria death pathway after Caspase 8 …

Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic …

PJ Kraulis, GM Clore, M Nilges, TA Jones… - Biochemistry, 1989 - ACS Publications
Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney
Diseases, National Institutes of Health, Bethesda, Maryland 20892, Department of Molecular …

Structure of sortase, the transpeptidase that anchors proteins to the cell wall of Staphylococcus aureus

U Ilangovan, H Ton-That, J Iwahara… - Proceedings of the …, 2001 - pnas.org
Surface proteins of Gram-positive bacteria play important roles during the pathogenesis of
human infections and require sortase for anchoring to the cell-wall envelope. Sortase …