Deciphering bacterial mechanisms of root colonization

HE Knights, B Jorrin, TL Haskett… - Environmental …, 2021 - Wiley Online Library
Bacterial colonization of the rhizosphere is critical for the establishment of plant–bacteria
interactions that represent a key determinant of plant health and productivity. Plants …

FPbase: a community-editable fluorescent protein database

TJ Lambert - Nature methods, 2019 - nature.com
To the Editor—The cloning and subsequent engineering of fluorescent proteins (FPs) has
revolutionized methods in biological research1, 2. There are now thousands of FPs …

Positive interactions are common among culturable bacteria

J Kehe, A Ortiz, A Kulesa, J Gore, PC Blainey… - Science …, 2021 - science.org
Interspecies interactions shape the structure and function of microbial communities. In
particular, positive, growth-promoting interactions can substantially affect the diversity and …

Strategies for improving small-molecule biosensors in bacteria

CA Miller, JML Ho, MR Bennett - Biosensors, 2022 - mdpi.com
In recent years, small-molecule biosensors have become increasingly important in synthetic
biology and biochemistry, with numerous new applications continuing to be developed …

Phyllosphere symbiont promotes plant growth through ACC deaminase production

JB Herpell, A Alickovic, B Diallo, F Schindler… - The ISME …, 2023 - academic.oup.com
Plant growth promoting bacteria can confer resistance to various types of stress and
increase agricultural yields. The mechanisms they employ are diverse. One of the most …

Cross-feeding niches among commensal leaf bacteria are shaped by the interaction of strain-level diversity and resource availability

M Murillo-Roos, HSM Abdullah, M Debbar… - The ISME …, 2022 - academic.oup.com
Leaf microbiomes play crucial roles in plant health, making it important to understand the
origins and functional relevance of their diversity. High strain-level leaf bacterial genetic …

Diverse and abundant phages exploit conjugative plasmids

N Quinones-Olvera, SV Owen, LM McCully… - Nature …, 2024 - nature.com
Phages exert profound evolutionary pressure on bacteria by interacting with receptors on
the cell surface to initiate infection. While the majority of phages use chromosomally …

The use of synthetic microbial communities to improve plant health

SJ Martins, J Pasche, HAO Silva, G Selten… - …, 2023 - Am Phytopath Society
Despite the numerous benefits plants receive from probiotics, maintaining consistent results
across applications is still a challenge. Cultivation-independent methods associated with …

Dual-expression system for blue fluorescent protein optimization

S Papadaki, X Wang, Y Wang, H Zhang, S Jia, S Liu… - Scientific Reports, 2022 - nature.com
Spectrally diverse fluorescent proteins (FPs) provide straightforward means for multiplexed
imaging of biological systems. Among FPs fitting standard color channels, blue FPs (BFPs) …

Stable, fluorescent markers for tracking synthetic communities and assembly dynamics

B Jorrin, TL Haskett, HE Knights, A Martyn… - Microbiome, 2024 - Springer
Background After two decades of extensive microbiome research, the current forefront of
scientific exploration involves moving beyond description and classification to uncovering …