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[PDF][PDF] A new operation on words suggested by DNA biochemistry: Hairpin completion
In this paper we propose a new formal operation on words and languages suggested by
DNA manipulation, called hairpin completion. By this operation, based on a Watson-Crick …
DNA manipulation, called hairpin completion. By this operation, based on a Watson-Crick …
[HTML][HTML] On some algorithmic problems regarding the hairpin completion
We consider a few algorithmic problems regarding the hairpin completion. The first problem
we consider is the membership problem of the hairpin and iterated hairpin completion of a …
we consider is the membership problem of the hairpin and iterated hairpin completion of a …
Two complementary operations inspired by the DNA hairpin formation: Completion and reduction
We consider two complementary operations: Hairpin completion introduced in [D. Cheptea,
C. Martin-Vide, V. Mitrana, A new operation on words suggested by DNA biochemistry …
C. Martin-Vide, V. Mitrana, A new operation on words suggested by DNA biochemistry …
Self-assembly of strings and languages
Self-assembly is the process in which simple objects autonomously aggregate into large
structures and it has become one of the major tools for nano-scale engineering. We propose …
structures and it has become one of the major tools for nano-scale engineering. We propose …
Hairpin completion versus hairpin reduction
We define the hairpin reduction as the inverse operation of a formal operation on words and
languages suggested by DNA biochemistry, namely the hairpin completion, introduced in …
languages suggested by DNA biochemistry, namely the hairpin completion, introduced in …
DNA word set design based on minimum free energy
The problem of data and information encoding on DNA bears an increasing interest for both
biological and nonbiological applications of biomolecular computing. Recent experimental …
biological and nonbiological applications of biomolecular computing. Recent experimental …
On the overlap assembly of strings and languages
This paper investigates properties of the binary string and language operation overlap
assembly which was defined by Csuhaj-Varjú, Petre and Vaszil as a formal model of the …
assembly which was defined by Csuhaj-Varjú, Petre and Vaszil as a formal model of the …
Bounded hairpin completion
Hairpin completion is a formal operation inspired from biochemistry. Here we consider a
restricted variant of hairpin completion called bounded hairpin completion. Applied to a word …
restricted variant of hairpin completion called bounded hairpin completion. Applied to a word …
Hairpin lengthening
The hairpin completion is a natural operation of formal languages which has been inspired
by molecular phenomena in biology and by DNA-computing. We consider here a new …
by molecular phenomena in biology and by DNA-computing. We consider here a new …
A formal language model of DNA polymerase enzymatic activity
We propose and investigate a formal language operation inspired by the naturally occurring
phenomenon of DNA primer extension by a DNA-template-directed DNA Polymerase …
phenomenon of DNA primer extension by a DNA-template-directed DNA Polymerase …