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Glycosaminoglycans: what remains to be deciphered?
Glycosaminoglycans (GAGs) are complex polysaccharides exhibiting a vast structural
diversity and fulfilling various functions mediated by thousands of interactions in the …
diversity and fulfilling various functions mediated by thousands of interactions in the …
Chitosan as a Canvas for Studies of Macromolecular Controls on CaCO3 Biological Crystallization
A mechanistic understanding of how macromolecules, typically as an organic matrix,
nucleate and grow crystals to produce functional biomineral structures remains elusive …
nucleate and grow crystals to produce functional biomineral structures remains elusive …
Solvent model benchmark for molecular dynamics of glycosaminoglycans
M Marcisz, SA Samsonov - Journal of chemical information and …, 2023 - ACS Publications
In computational studies of glycosaminoglycans (GAGs), a group of anionic, periodic linear
polysaccharides, so far there has been very little discussion about the role of solvent models …
polysaccharides, so far there has been very little discussion about the role of solvent models …
Revealing the key structural features promoting the helical conformation in algal polysaccharide carrageenan in solution
Carrageenans are industrially important polysaccharides with tunable viscoelastic and
gelation properties. The function of polysaccharide depends on its conformation and …
gelation properties. The function of polysaccharide depends on its conformation and …
Kinetics of Calcite Nucleation onto Sulfated Chitosan Derivatives and Implications for Water–Polysaccharide Interactions during Crystallization of Sparingly Soluble …
Anionic macromolecules are found at sites of CaCO3 biomineralization in diverse
organisms, but their roles in crystallization are not well-understood. We prepared a series of …
organisms, but their roles in crystallization are not well-understood. We prepared a series of …
Sulfation effects of chondroitin sulfate to bind a chemokine in aqueous medium: conformational heterogeneity and dynamics from molecular simulation
The sulfation patterns and degree of sulfation of chondroitin sulfate (CS), an important class
of glycosaminoglycans (GAG), and their interactions with chemokines are accountable for …
of glycosaminoglycans (GAG), and their interactions with chemokines are accountable for …
Comparative Bindings of Glycosaminoglycans with CXCL8 Monomer and Dimer: Insights from Conformational Dynamics and Kinetics of Hydrogen Bonds
GAGs bind to both the monomeric and dimeric forms of CXCL8, hel** to form a
concentration gradient of the chemokine that facilitates the recruitment of neutrophils to an …
concentration gradient of the chemokine that facilitates the recruitment of neutrophils to an …
Molecular dynamics simulation: Effect of sulfation on the structure of curdlan triple helix in aqueous solution
Y Gao, X Feng, R Zhang, J **ao, Q Huang, J Li… - International Journal of …, 2024 - Elsevier
In this work, by using molecular dynamics simulations, we elucidate the effect of sulfation
substitution on the stability of the curdlan triple helix structure. The simulation results indicate …
substitution on the stability of the curdlan triple helix structure. The simulation results indicate …
Conformational preferences of heparan sulfate to recognize the CXCL8 dimer in aqueous medium: degree of sulfation and hydrogen bonds
The sulfation pattern and epimerization of the long-chain sulfated polysaccharide heparan
sulfate (HS) cause structural diversity and regulate various physiological and pathological …
sulfate (HS) cause structural diversity and regulate various physiological and pathological …
Comparison of the conformational dynamics of an N-glycan in implicit and explicit solvents
All-atom MD simulations provide the atomic details of glycan structure in solution, but
extensive sampling is required for simulating the transition between rotameric states. For …
extensive sampling is required for simulating the transition between rotameric states. For …