Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie… - …, 2019 - academic.oup.com
Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …

The W3C PROV family of specifications for modelling provenance metadata

P Missier, K Belhajjame, J Cheney - Proceedings of the 16th …, 2013 - dl.acm.org
Provenance, a form of structured metadata designed to record the origin or source of
information, can be instrumental in deciding whether information is to be trusted, how it can …

Provenance analytics for workflow-based computational experiments: A survey

W Oliveira, DD Oliveira, V Braganholo - ACM Computing Surveys (CSUR …, 2018 - dl.acm.org
Until not long ago, manually capturing and storing provenance from scientific experiments
were constant concerns for scientists. With the advent of computational experiments …

Common motifs in scientific workflows: An empirical analysis

D Garijo, P Alper, K Belhajjame, O Corcho, Y Gil… - Future generation …, 2014 - Elsevier
Workflow technology continues to play an important role as a means for specifying and
enacting computational experiments in modern science. Reusing and re-purposing …

Why workflows break—Understanding and combating decay in Taverna workflows

J Zhao, JM Gomez-Perez, K Belhajjame… - 2012 IEEE 8th …, 2012 - ieeexplore.ieee.org
Workflows provide a popular means for preserving scientific methods by explicitly encoding
their process. However, some of them are subject to a decay in their ability to be re-executed …

Investigating reproducibility and tracking provenance–a genomic workflow case study

S Kanwal, FZ Khan, A Lonie, RO Sinnott - BMC bioinformatics, 2017 - Springer
Background Computational bioinformatics workflows are extensively used to analyse
genomics data, with different approaches available to support implementation and execution …

PAV ontology: provenance, authoring and versioning

P Ciccarese, S Soiland-Reyes, K Belhajjame… - Journal of biomedical …, 2013 - Springer
Background Provenance is a critical ingredient for establishing trust of published scientific
content. This is true whether we are considering a data set, a computational workflow, a peer …

[PDF][PDF] Decentralized provenance-aware publishing with nanopublications

T Kuhn, C Chichester, M Krauthammer… - PeerJ Computer …, 2016 - peerj.com
Publication and archival of scientific results is still commonly considered the responsability
of classical publishing companies. Classical forms of publishing, however, which center …

CyVerse: Cyberinfrastructure for open science

TL Swetnam, PB Antin, R Bartelme… - PLoS Computational …, 2024 - journals.plos.org
CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life
sciences, has played a crucial role in advancing data-driven research since the 2010s. As …

Sciunits: Reusable research objects

DHT That, G Fils, Z Yuan, T Malik - arxiv preprint arxiv:1707.05731, 2017 - arxiv.org
Science is conducted collaboratively, often requiring knowledge sharing about
computational experiments. When experiments include only datasets, they can be shared …