Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv
Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …
a widely adopted practice in many fields of research. Computationally driven data-intensive …
The W3C PROV family of specifications for modelling provenance metadata
Provenance, a form of structured metadata designed to record the origin or source of
information, can be instrumental in deciding whether information is to be trusted, how it can …
information, can be instrumental in deciding whether information is to be trusted, how it can …
Provenance analytics for workflow-based computational experiments: A survey
Until not long ago, manually capturing and storing provenance from scientific experiments
were constant concerns for scientists. With the advent of computational experiments …
were constant concerns for scientists. With the advent of computational experiments …
Common motifs in scientific workflows: An empirical analysis
Workflow technology continues to play an important role as a means for specifying and
enacting computational experiments in modern science. Reusing and re-purposing …
enacting computational experiments in modern science. Reusing and re-purposing …
Why workflows break—Understanding and combating decay in Taverna workflows
Workflows provide a popular means for preserving scientific methods by explicitly encoding
their process. However, some of them are subject to a decay in their ability to be re-executed …
their process. However, some of them are subject to a decay in their ability to be re-executed …
Investigating reproducibility and tracking provenance–a genomic workflow case study
Background Computational bioinformatics workflows are extensively used to analyse
genomics data, with different approaches available to support implementation and execution …
genomics data, with different approaches available to support implementation and execution …
PAV ontology: provenance, authoring and versioning
Background Provenance is a critical ingredient for establishing trust of published scientific
content. This is true whether we are considering a data set, a computational workflow, a peer …
content. This is true whether we are considering a data set, a computational workflow, a peer …
[PDF][PDF] Decentralized provenance-aware publishing with nanopublications
Publication and archival of scientific results is still commonly considered the responsability
of classical publishing companies. Classical forms of publishing, however, which center …
of classical publishing companies. Classical forms of publishing, however, which center …
CyVerse: Cyberinfrastructure for open science
CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life
sciences, has played a crucial role in advancing data-driven research since the 2010s. As …
sciences, has played a crucial role in advancing data-driven research since the 2010s. As …
Sciunits: Reusable research objects
Science is conducted collaboratively, often requiring knowledge sharing about
computational experiments. When experiments include only datasets, they can be shared …
computational experiments. When experiments include only datasets, they can be shared …