Minor allele frequency thresholds strongly affect population structure inference with genomic data sets
A common method of minimizing errors in large DNA sequence data sets is to drop variable
sites with a minor allele frequency (MAF) below some specified threshold. Although …
sites with a minor allele frequency (MAF) below some specified threshold. Although …
Next-generation data filtering in the genomics era
Genomic data are ubiquitous across disciplines, from agriculture to biodiversity, ecology,
evolution and human health. However, these datasets often contain noise or errors and are …
evolution and human health. However, these datasets often contain noise or errors and are …
Faster‐X evolution: Theory and evidence from Drosophila
A faster rate of adaptive evolution of X‐linked genes compared with autosomal genes can
be caused by the fixation of recessive or partially recessive advantageous mutations, due to …
be caused by the fixation of recessive or partially recessive advantageous mutations, due to …
Evolutionary genomics of a subdivided species
The ways in which genetic variation is distributed within and among populations is a key
determinant of the evolutionary features of a species. However, most comprehensive studies …
determinant of the evolutionary features of a species. However, most comprehensive studies …
The effect of balancing selection on population differentiation: a study with HLA genes
Balancing selection is defined as a class of selective regimes that maintain polymorphism
above what is expected under neutrality. Theory predicts that balancing selection reduces …
above what is expected under neutrality. Theory predicts that balancing selection reduces …
Genetics and evidence for balancing selection of a sex-linked colour polymorphism in a songbird
Colour polymorphisms play a key role in sexual selection and speciation, yet the
mechanisms that generate and maintain them are not fully understood. Here, we use …
mechanisms that generate and maintain them are not fully understood. Here, we use …
Genomic differentiation across the speciation continuum in three hummingbird species pairs
EC Henderson, A Brelsford - BMC Evolutionary Biology, 2020 - Springer
Background The study of speciation has expanded with the increasing availability and
affordability of high-resolution genomic data. How the genome evolves throughout the …
affordability of high-resolution genomic data. How the genome evolves throughout the …
High nucleotide diversity accompanies differential DNA methylation in naturally diverging populations
Epigenetic mechanisms such as DNA methylation (DNAme) are thought to comprise an
invaluable adaptive toolkit in the early stages of local adaptation, especially when genetic …
invaluable adaptive toolkit in the early stages of local adaptation, especially when genetic …
CYSTM, a Novel Non-Secreted Cysteine-Rich Peptide Family, Involved in Environmental Stresses in Arabidopsis thaliana
Y Xu, Z Yu, D Zhang, J Huang, C Wu… - Plant and Cell …, 2018 - academic.oup.com
The cysteine-rich transmembrane module (CYSTM) is comprised of a small molecular
protein family that is found in a diversity of tail-anchored membrane proteins across …
protein family that is found in a diversity of tail-anchored membrane proteins across …
Population-Genomic Analysis Identifies a Low Rate of Global Adaptive Fixation in the Proteins of the Cyclical Parthenogen Daphnia magna
Daphnia are well-established ecological and evolutionary models, and the interaction
between D. magna and its microparasites is widely considered a paragon of the host …
between D. magna and its microparasites is widely considered a paragon of the host …