Machine learning meets omics: applications and perspectives

R Li, L Li, Y Xu, J Yang - Briefings in Bioinformatics, 2022 - academic.oup.com
The innovation of biotechnologies has allowed the accumulation of omics data at an
alarming rate, thus introducing the era of 'big data'. Extracting inherent valuable knowledge …

[HTML][HTML] Single-cell metabolomics: where are we and where are we going?

I Lanekoff, VV Sharma, C Marques - Current opinion in biotechnology, 2022 - Elsevier
Single-cell metabolomics with mass spectrometry enables a large variety of metabolites to
be simultaneously detected from individual cells, without any preselection or labelling, to …

Fully automated unconstrained analysis of high-resolution mass spectrometry data with machine learning

DA Boiko, KS Kozlov, JV Burykina… - Journal of the …, 2022 - ACS Publications
Mass spectrometry (MS) is a convenient, highly sensitive, and reliable method for the
analysis of complex mixtures, which is vital for materials science, life sciences fields such as …

Recent developments in machine learning for mass spectrometry

AG Beck, M Muhoberac, CE Randolph… - ACS Measurement …, 2024 - ACS Publications
Statistical analysis and modeling of mass spectrometry (MS) data have a long and rich
history with several modern MS-based applications using statistical and chemometric …

An ensemble method of the machine learning to prognosticate the gastric cancer

H Baradaran Rezaei, A Amjadian, MV Sebt… - Annals of Operations …, 2023 - Springer
Gastric Cancer is the most common malignancy of the digestive tract, which is the third
leading cause of cancer-related mortality worldwide. The early prognosis methods …

AI/ML-driven advances in untargeted metabolomics and exposomics for biomedical applications

LM Petrick, N Shomron - Cell Reports Physical Science, 2022 - cell.com
Metabolomics describes a high-throughput approach for measuring a repertoire of
metabolites and small molecules in biological samples. One utility of untargeted …

Lipid heterogeneity between astrocytes and neurons revealed by single‐cell MALDI‐MS combined with immunocytochemical classification

EK Neumann, TJ Comi, SS Rubakhin… - Angewandte …, 2019 - Wiley Online Library
Transcriptomics characterizes cells based on their potential molecular repertoire whereas
direct mass spectrometry (MS) provides information on the actual compounds present within …

Engineering in medicine to address the challenge of cancer drug resistance: from micro-and nanotechnologies to computational and mathematical modeling

M Craig, AL Jenner, B Namgung, LP Lee… - Chemical …, 2020 - ACS Publications
Drug resistance has profoundly limited the success of cancer treatment, driving relapse,
metastasis, and mortality. Nearly all anticancer drugs and even novel immunotherapies …

Chemical strategies to overcome resistance against targeted anticancer therapeutics

R Pisa, TM Kapoor - Nature chemical biology, 2020 - nature.com
Emergence of resistance is a major factor limiting the efficacy of molecularly targeted
anticancer drugs. Understanding the specific mutations, or other genetic or cellular changes …

Single-cell mass spectrometry enables insight into heterogeneity in infectious disease

TD Nguyen, Y Lan, SS Kane, JJ Haffner, R Liu… - Analytical …, 2022 - ACS Publications
Cellular heterogeneity is generally overlooked in infectious diseases. In this study, we
investigated host cell heterogeneity during infection with Trypanosoma cruzi (T. cruzi) …