Double-edged sword: the evolutionary consequences of the epigenetic silencing of transposable elements

JY Choi, YCG Lee - PLoS genetics, 2020 - journals.plos.org
Transposable elements (TEs) are genomic parasites that selfishly replicate at the expense of
host fitness. Fifty years of evolutionary studies of TEs have concentrated on the deleterious …

Mutation–selection balance and compensatory mechanisms in tumour evolution

E Persi, YI Wolf, D Horn, E Ruppin… - Nature Reviews …, 2021 - nature.com
Intratumour heterogeneity and phenotypic plasticity, sustained by a range of somatic
aberrations, as well as epigenetic and metabolic adaptations, are the principal mechanisms …

Tuberculosis and impaired IL-23–dependent IFN-γ immunity in humans homozygous for a common TYK2 missense variant

S Boisson-Dupuis, N Ramirez-Alejo, Z Li, E Patin… - Science …, 2018 - science.org
Inherited IL-12Rβ1 and TYK2 deficiencies impair both IL-12–and IL-23–dependent IFN-γ
immunity and are rare monogenic causes of tuberculosis, each found in less than 1/600,000 …

Non-B DNA: a major contributor to small-and large-scale variation in nucleotide substitution frequencies across the genome

WM Guiblet, MA Cremona, RS Harris… - Nucleic Acids …, 2021 - academic.oup.com
Approximately 13% of the human genome can fold into non-canonical (non-B) DNA
structures (eg G-quadruplexes, Z-DNA, etc.), which have been implicated in vital cellular …

Rapid evolution of mutation rate and spectrum in response to environmental and population-genetic challenges

W Wei, WC Ho, MG Behringer, SF Miller… - Nature …, 2022 - nature.com
Ecological and demographic factors can significantly shape the evolution of microbial
populations both directly and indirectly, as when changes in the effective population size …

Environmental modulation of global epistasis in a drug resistance fitness landscape

J Diaz-Colunga, A Sanchez… - Nature Communications, 2023 - nature.com
Interactions between mutations (epistasis) can add substantial complexity to genotype-
phenotype maps, hampering our ability to predict evolution. Yet, recent studies have shown …

[LIBRO][B] Population genetics and microevolutionary theory

AR Templeton - 2021 - books.google.com
Population Genetics and Microevolutionary Theory Explore the fundamentals of the
biological implications of population genetic theory In the newly revised Second Edition of …

The genome-wide signature of short-term temporal selection

M Lynch, W Wei, Z Ye, M Pfrender - … of the National Academy of Sciences, 2024 - pnas.org
Despite evolutionary biology's obsession with natural selection, few studies have evaluated
multigenerational series of patterns of selection on a genome-wide scale in natural …

High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast

AN Nguyen Ba, I Cvijović, JI Rojas Echenique… - Nature, 2019 - nature.com
In rapidly adapting asexual populations, including many microbial pathogens and viruses,
numerous mutant lineages often compete for dominance within the population,,,–. These …

Environmental memory alters the fitness effects of adaptive mutations in fluctuating environments

CI Abreu, S Mathur, DA Petrov - Nature Ecology & Evolution, 2024 - nature.com
Evolution in a static laboratory environment often proceeds via large-effect beneficial
mutations that may become maladaptive in other environments. Conversely, natural settings …