[HTML][HTML] The evolutionary and ecological potential of yeast hybrids

R Stelkens, DP Bendixsen - Current Opinion in Genetics & Development, 2022 - Elsevier
Recent findings in yeast genetics and genomics have advanced our understanding of the
evolutionary potential unlocked by hybridization, especially in the genus Saccharomyces …

Role of genetic architecture in phenotypic plasticity

P Kovuri, A Yadav, H Sinha - Trends in Genetics, 2023 - cell.com
Phenotypic plasticity, the ability of an organism to display different phenotypes across
environments, is widespread in nature. Plasticity aids survival in novel environments …

Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data

D Moradigaravand, M Palm, A Farewell… - PLoS computational …, 2018 - journals.plos.org
The emergence of microbial antibiotic resistance is a global health threat. In clinical settings,
the key to controlling spread of resistant strains is accurate and rapid detection. As …

[HTML][HTML] Contrasting evolutionary genome dynamics between domesticated and wild yeasts

JX Yue, J Li, L Aigrain, J Hallin, K Persson, K Oliver… - Nature …, 2017 - nature.com
Structural rearrangements have long been recognized as an important source of genetic
variation, with implications in phenotypic diversity and disease, yet their detailed …

The interplay of additivity, dominance, and epistasis on fitness in a diploid yeast cross

T Matsui, MN Mullis, KR Roy, JJ Hale, R Schell… - Nature …, 2022 - nature.com
In diploid species, genetic loci can show additive, dominance, and epistatic effects. To
characterize the contributions of these different types of genetic effects to heritable traits, we …

Scan-o-matic: high-resolution microbial phenomics at a massive scale

M Zackrisson, J Hallin, LG Ottosson… - G3: Genes …, 2016 - academic.oup.com
The capacity to map traits over large cohorts of individuals—phenomics—lags far behind the
explosive development in genomics. For microbes, the estimation of growth is the key …

Natural variants suppress mutations in hundreds of essential genes

L Parts, A Batté, M Lopes, MW Yuen… - Molecular Systems …, 2021 - embopress.org
The consequence of a mutation can be influenced by the context in which it operates. For
example, loss of gene function may be tolerated in one genetic background, and lethal in …

Interaction models matter: an efficient, flexible computational framework for model-specific investigation of epistasis

S Batista, VS Madar, PJ Freda, P Bhandary, A Ghosh… - BioData Mining, 2024 - Springer
Purpose Epistasis, the interaction between two or more genes, is integral to the study of
genetics and is present throughout nature. Yet, it is seldom fully explored as most …

Accurate tracking of the mutational landscape of diploid hybrid genomes

L Tattini, N Tellini, S Mozzachiodi… - Molecular Biology …, 2019 - academic.oup.com
Mutations, recombinations, and genome duplications may promote genetic diversity and
trigger evolutionary processes. However, quantifying these events in diploid hybrid …

Epistasis: searching for interacting genetic variants using crosses

IM Ehrenreich - Genetics, 2017 - academic.oup.com
Within quantitative genetics, the term “epistasis” is used to broadly describe situations in
which combinations of genetic variants show nonadditive phenotypic effects (Phillips 1998 …