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Common principles and best practices for engineering microbiomes
Despite broad scientific interest in harnessing the power of Earth's microbiomes, knowledge
gaps hinder their efficient use for addressing urgent societal and environmental challenges …
gaps hinder their efficient use for addressing urgent societal and environmental challenges …
Fungi in aquatic ecosystems
HP Grossart, S Van den Wyngaert, M Kagami… - Nature Reviews …, 2019 - nature.com
Fungi are phylogenetically and functionally diverse ubiquitous components of almost all
ecosystems on Earth, including aquatic environments stretching from high montane lakes …
ecosystems on Earth, including aquatic environments stretching from high montane lakes …
Microbiome-functionality in anaerobic digesters: a critical review
X Zhang, Y Wang, P Jiao, M Zhang, Y Deng, C Jiang… - Water Research, 2024 - Elsevier
Microbially driven anaerobic digestion (AD) processes are of immense interest due to their
role in the biovalorization of biowastes into renewable energy resources. The function …
role in the biovalorization of biowastes into renewable energy resources. The function …
Nitrogen recovery through fermentative dissimilatory nitrate reduction to ammonium (DNRA): carbon source comparison and metabolic pathway
Y Zhao, Q Li, Q Cui, SQ Ni - Chemical Engineering Journal, 2022 - Elsevier
The dissimilatory nitrate reduction to ammonium (DNRA) process was known as a short
circuit in nitrogen cycle, a key step in recovering nitrogen from nitrate wastewater, and has …
circuit in nitrogen cycle, a key step in recovering nitrogen from nitrate wastewater, and has …
A review of methods and databases for metagenomic classification and assembly
Microbiome research has grown rapidly over the past decade, with a proliferation of new
methods that seek to make sense of large, complex data sets. Here, we survey two of the …
methods that seek to make sense of large, complex data sets. Here, we survey two of the …
Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future
The rumen is a complex ecosystem composed of anaerobic bacteria, protozoa, fungi,
methanogenic archaea and phages. These microbes interact closely to breakdown plant …
methanogenic archaea and phages. These microbes interact closely to breakdown plant …
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system
Partial-nitritation anammox (PNA) is a novel wastewater treatment procedure for energy-
efficient ammonium removal. Here we use genome-resolved metagenomics to build a …
efficient ammonium removal. Here we use genome-resolved metagenomics to build a …
Syntrophic propionate-oxidizing bacteria in methanogenic systems
M Westerholm, M Calusinska… - FEMS Microbiology …, 2022 - academic.oup.com
The mutual nutritional cooperation underpinning syntrophic propionate degradation
provides a scant amount of energy for the microorganisms involved, so propionate …
provides a scant amount of energy for the microorganisms involved, so propionate …
[HTML][HTML] Biogas production through syntrophic acetate oxidation and deliberate operating strategies for improved digester performance
M Westerholm, J Moestedt, A Schnürer - Applied energy, 2016 - Elsevier
Anaerobic degradation of protein-rich materials has high methane potential and produces
nutrient-rich residue, but requires strategies to avoid ammonia inhibition. A well-adapted …
nutrient-rich residue, but requires strategies to avoid ammonia inhibition. A well-adapted …
Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen
The ecophysiology of one candidate methanogen class WSA2 (or Arc I) remains largely
uncharacterized, despite the long history of research on Euryarchaeota methanogenesis. To …
uncharacterized, despite the long history of research on Euryarchaeota methanogenesis. To …