Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

R Amann, BM Fuchs - Nature Reviews Microbiology, 2008 - nature.com
The ribosomal-RNA (rRNA) approach to microbial evolution and ecology has become an
integral part of environmental microbiology. Based on the patchy conservation of rRNA …

Fluorescence in situ hybridization for the detection of prokaryotes

H Daims, K Stoecker, M Wagner - Molecular microbial ecology, 2004 - taylorfrancis.com
Determining the structure and dynamics of microbial communities is a core component of
microbial ecology. Traditionally, microbiologists used timeconsuming cultivation-based …

Basidiomycete yeasts in the cortex of ascomycete macrolichens

T Spribille, V Tuovinen, P Resl, D Vanderpool… - Science, 2016 - science.org
For over 140 years, lichens have been regarded as a symbiosis between a single fungus,
usually an ascomycete, and a photosynthesizing partner. Other fungi have long been known …

SAR11 clade dominates ocean surface bacterioplankton communities

RM Morris, MS Rappé, SA Connon, KL Vergin… - Nature, 2002 - nature.com
The most abundant class of bacterial ribosomal RNA genes detected in seawater DNA by
gene cloning belongs to SAR11—an α-proteobacterial clade. Other than indications of their …

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

A Pernthaler, J Pernthaler, R Amann - Applied and environmental …, 2002 - Am Soc Microbiol
Fluorescence in situ hybridization (FISH) with horseradish peroxidase (HRP)-labeled
oligonucleotide probes and tyramide signal amplification, also known as catalyzed reporter …

Identification of active denitrifiers in full‐scale nutrient removal wastewater treatment systems

SJ McIlroy, A Starnawska, P Starnawski… - Environmental …, 2016 - Wiley Online Library
Denitrification is essential to the removal of nitrogen from wastewater during treatment, yet
an understanding of the diversity of the active denitrifying bacteria responsible in full‐scale …

Discovery of novel intermediate forms redefines the fungal tree of life

MDM Jones, I Forn, C Gadelha, MJ Egan, D Bass… - Nature, 2011 - nature.com
Fungi are the principal degraders of biomass in terrestrial ecosystems and establish
important interactions with plants and animals,,. However, our current understanding of …

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

P Narasingarao, S Podell, JA Ugalde… - The ISME …, 2012 - academic.oup.com
This study describes reconstruction of two highly unusual archaeal genomes by de novo
metagenomic assembly of multiple, deeply sequenced libraries from surface waters of Lake …

[LLIBRE][B] Manual of environmental microbiology

CJ Hurst, RL Crawford, JL Garland, DA Lipson - 2007 - books.google.com
The most definitive manual of microbes in air, water, and soil and their impact on human
health and welfare.• Incorporates a summary of the latest methodology used to study the …

Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

FO Glöckner, E Zaichikov, N Belkova… - Applied and …, 2000 - Am Soc Microbiol
In a search for cosmopolitan phylogenetic clusters of freshwater bacteria, we recovered a
total of 190 full and partial 16S ribosomal DNA (rDNA) sequences from three different lakes …