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Museum of spatial transcriptomics
The function of many biological systems, such as embryos, liver lobules, intestinal villi, and
tumors, depends on the spatial organization of their cells. In the past decade, high …
tumors, depends on the spatial organization of their cells. In the past decade, high …
Single-cell transcriptome analysis in plants: advances and challenges
The rapid and enthusiastic adoption of single-cell RNA sequencing (scRNA-seq) has
demonstrated that this technology is far more than just another way to perform transcriptome …
demonstrated that this technology is far more than just another way to perform transcriptome …
Spatially informed cell-type deconvolution for spatial transcriptomics
Many spatially resolved transcriptomic technologies do not have single-cell resolution but
measure the average gene expression for each spot from a mixture of cells of potentially …
measure the average gene expression for each spot from a mixture of cells of potentially …
Spatiotemporal immune landscape of colorectal cancer liver metastasis at single-cell level
Y Wu, S Yang, J Ma, Z Chen, G Song, D Rao, Y Cheng… - Cancer discovery, 2022 - AACR
Liver metastasis, the leading cause of colorectal cancer mortality, exhibits a highly
heterogeneous and suppressive immune microenvironment. Here, we sequenced 97 …
heterogeneous and suppressive immune microenvironment. Here, we sequenced 97 …
[HTML][HTML] Spatial transcriptomics and in situ sequencing to study Alzheimer's disease
Although complex inflammatory-like alterations are observed around the amyloid plaques of
Alzheimer's disease (AD), little is known about the molecular changes and cellular …
Alzheimer's disease (AD), little is known about the molecular changes and cellular …
Robust decomposition of cell type mixtures in spatial transcriptomics
A limitation of spatial transcriptomics technologies is that individual measurements may
contain contributions from multiple cells, hindering the discovery of cell-type-specific spatial …
contain contributions from multiple cells, hindering the discovery of cell-type-specific spatial …
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
Charting an organs' biological atlas requires us to spatially resolve the entire single-cell
transcriptome, and to relate such cellular features to the anatomical scale. Single-cell and …
transcriptome, and to relate such cellular features to the anatomical scale. Single-cell and …
Spatially aware dimension reduction for spatial transcriptomics
Spatial transcriptomics are a collection of genomic technologies that have enabled
transcriptomic profiling on tissues with spatial localization information. Analyzing spatial …
transcriptomic profiling on tissues with spatial localization information. Analyzing spatial …
DSTG: deconvoluting spatial transcriptomics data through graph-based artificial intelligence
Recent development of spatial transcriptomics (ST) is capable of associating spatial
information at different spots in the tissue section with RNA abundance of cells within each …
information at different spots in the tissue section with RNA abundance of cells within each …
NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport
Single-cell RNA-sequencing (scRNA-seq) technologies have revolutionized modern
biomedical sciences. A fundamental challenge is to incorporate spatial information to study …
biomedical sciences. A fundamental challenge is to incorporate spatial information to study …